View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_10 (Length: 511)

Name: NF1602_low_10
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_10
NF1602_low_10
[»] chr3 (2 HSPs)
chr3 (219-262)||(20945387-20945430)
chr3 (219-262)||(26517302-26517345)
[»] chr5 (3 HSPs)
chr5 (219-253)||(35569089-35569123)
chr5 (219-262)||(38972210-38972253)
chr5 (219-261)||(27587816-27587858)
[»] chr8 (2 HSPs)
chr8 (219-264)||(14577738-14577783)
chr8 (222-251)||(14522693-14522722)
[»] chr2 (4 HSPs)
chr2 (219-264)||(2131732-2131777)
chr2 (219-253)||(27749498-27749532)
chr2 (219-252)||(45214712-45214745)
chr2 (219-251)||(38982164-38982196)
[»] chr1 (4 HSPs)
chr1 (219-264)||(27531073-27531118)
chr1 (219-262)||(13723562-13723605)
chr1 (219-262)||(23982676-23982719)
chr1 (219-249)||(32152147-32152177)
[»] chr4 (4 HSPs)
chr4 (221-264)||(50165868-50165911)
chr4 (222-264)||(29584869-29584911)
chr4 (219-249)||(41920123-41920153)
chr4 (219-264)||(54701372-54701417)
[»] chr6 (1 HSPs)
chr6 (219-252)||(22410929-22410962)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 20945387 - 20945430
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 262  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  20945387 aacttttcttaagaaatgtgaaaaatgtaaaaggtgtttacata 20945430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 26517302 - 26517345
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 262  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  26517302 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacata 26517345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 35569089 - 35569123
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggt 253  Q
    |||||||||||||||||||||||||||||||||||    
T  35569089 aacttttcttaagaaatgtgaaaaatgtaaagggt 35569123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 38972210 - 38972253
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 262  Q
    |||||||||||||||||||||||||||||||  || ||||||||    
T  38972210 aacttttcttaagaaatgtgaaaaatgtaaaatgtgtttacata 38972253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 27587858 - 27587816
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacat 261  Q
    ||||||||||||||||||||||||| ||||||||  |||||||    
T  27587858 aacttttcttaagaaatgtgaaaaaagtaaagggagtttacat 27587816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 14577738 - 14577783
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||    
T  14577738 aacttttcttaagaaatgtgaaaaatgtaaaggatgcttacataca 14577783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 14522693 - 14522722
Alignment:
Q  222 ttttcttaagaaatgtgaaaaatgtaaagg 251  Q
    ||||||||||||||||||||||||||||||    
T  14522693 ttttcttaagaaatgtgaaaaatgtaaagg 14522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 2131777 - 2131732
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||    
T  2131777 aacttttcttaagaaatgtaaaaaatgtaaaaggtatttagataca 2131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 27749532 - 27749498
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggt 253  Q
    ||||||||||||||||||||||||| |||||||||    
T  27749532 aacttttcttaagaaatgtgaaaaaagtaaagggt 27749498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 45214745 - 45214712
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaaggg 252  Q
    ||||||||||||||||||||||||||| ||||||    
T  45214745 aacttttcttaagaaatgtgaaaaatgcaaaggg 45214712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 38982164 - 38982196
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagg 251  Q
    ||||||||||||||||||| |||||||||||||    
T  38982164 aacttttcttaagaaatgtaaaaaatgtaaagg 38982196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 27531118 - 27531073
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||    
T  27531118 aacttttcttaagaaatgtgaaaaatgcaaagggaacttacataca 27531073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 13723562 - 13723605
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 262  Q
    ||||||||||||||||||||||||||| |||||||  |||||||    
T  13723562 aacttttcttaagaaatgtgaaaaatgcaaagggtgcttacata 13723605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 23982676 - 23982719
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacata 262  Q
    ||||||||||||||||||||||||||| |||||| | |||||||    
T  23982676 aacttttcttaagaaatgtgaaaaatgcaaaggggacttacata 23982719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 249
Target Start/End: Complemental strand, 32152177 - 32152147
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaa 249  Q
    |||||||||||||||||||||||||||||||    
T  32152177 aacttttcttaagaaatgtgaaaaatgtaaa 32152147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 50165868 - 50165911
Alignment:
Q  221 cttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  50165868 cttttcttaagaaatatgaaaaatgtaaaaggtgtttacataca 50165911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 29584911 - 29584869
Alignment:
Q  222 ttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  29584911 ttttcttaagaaatgtgaaaaatgcaaagggtgcttacataca 29584869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 41920123 - 41920153
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaa 249  Q
    |||||||||||||||||||||||||||||||    
T  41920123 aacttttcttaagaaatgtgaaaaatgtaaa 41920153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 54701372 - 54701417
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaagggtatttacataca 264  Q
    |||||||||||| ||||||||||||||||||||  | |||||||||    
T  54701372 aacttttcttaaaaaatgtgaaaaatgtaaaggagacttacataca 54701417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 22410929 - 22410962
Alignment:
Q  219 aacttttcttaagaaatgtgaaaaatgtaaaggg 252  Q
    ||||||||||||||||||||||||| ||||||||    
T  22410929 aacttttcttaagaaatgtgaaaaaagtaaaggg 22410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University