View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_11 (Length: 506)
Name: NF1602_low_11
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 44001995 - 44001730
Alignment:
| Q |
1 |
atcacacacttattgagtatcgtaaaagcacaaactcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatttcatttcaa |
100 |
Q |
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| T |
44001995 |
atcacacacttattgagtatcgtaaaagcacaacctcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatttcatttcaa |
44001896 |
T |
|
| Q |
101 |
aataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagtttcgattcgatctggtggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44001895 |
aataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagattcgattcgatctggtggttt |
44001796 |
T |
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| Q |
201 |
gggcggtctaaataactcttaattaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
270 |
Q |
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| T |
44001795 |
gggcggtctaaataactc----ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
44001730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 317 - 488
Target Start/End: Complemental strand, 44001682 - 44001514
Alignment:
| Q |
317 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
416 |
Q |
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| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
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| Q |
417 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatggt |
488 |
Q |
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| T |
44001585 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatggt |
44001514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 473
Target Start/End: Original strand, 39865935 - 39866038
Alignment:
| Q |
370 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaac |
469 |
Q |
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||||| || |||||||||||||| | ||||| ||||||||| | ||||| ||||| || |||||||||||||||||||| |||||| ||||||||||| |
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| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatgcagtgaacattttgtttcaagaaa |
39866034 |
T |
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| Q |
470 |
ttgg |
473 |
Q |
| |
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|||| |
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| T |
39866035 |
ttgg |
39866038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 39861478 - 39861584
Alignment:
| Q |
367 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaag |
466 |
Q |
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|||||||| || |||||||||||||| | ||||| ||||| ||||||||||| ||||| || |||||| | ||||||||||| |||||| ||||||||| |
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| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatgcagtgaacattttgtttcaag |
39861577 |
T |
|
| Q |
467 |
aacttgg |
473 |
Q |
| |
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|| |||| |
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| T |
39861578 |
aaattgg |
39861584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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