View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1602_low_12 (Length: 497)
Name: NF1602_low_12
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_12 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 16297477 - 16297808
Alignment:
| Q |
17 |
agataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaag |
116 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16297477 |
agataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaattgcatcttgatgctttgagattcaaag |
16297576 |
T |
|
| Q |
117 |
caaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgatacc |
216 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16297577 |
caaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgttgaaaatattgatacc |
16297676 |
T |
|
| Q |
217 |
aattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgc |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16297677 |
aattcaaaccacaagactttgagcaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgc |
16297776 |
T |
|
| Q |
317 |
ataatcaaaattagatgatatcggtattcaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
16297777 |
ataatcaaaattagatgatatcggtattcaac |
16297808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 16305179 - 16305510
Alignment:
| Q |
17 |
agataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaag |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16305179 |
agataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaattgcatcttgatgctttgagattcaaag |
16305278 |
T |
|
| Q |
117 |
caaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgatacc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16305279 |
caaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcatatacaaaaatagtaagccaatagcataaaaatgttgaaaatattgatacc |
16305378 |
T |
|
| Q |
217 |
aattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgc |
316 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
16305379 |
aattcaaaccacaagactttgagtaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgc |
16305478 |
T |
|
| Q |
317 |
ataatcaaaattagatgatatcggtattcaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16305479 |
ataatcaaaattagatgatatcggtattcaac |
16305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 16297861 - 16297940
Alignment:
| Q |
401 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
480 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16297861 |
cacatactggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16297940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 16305563 - 16305642
Alignment:
| Q |
401 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
480 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16305563 |
cacatacttgcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16305642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 22894964 - 22895295
Alignment:
| Q |
17 |
agataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaag |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22894964 |
agataaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatactttgagattcaaag |
22895063 |
T |
|
| Q |
117 |
caaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgatacc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895064 |
caaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcaaatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgatacc |
22895163 |
T |
|
| Q |
217 |
aattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgc |
316 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22895164 |
aattcaaaccacaagactttgaggaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgc |
22895263 |
T |
|
| Q |
317 |
ataatcaaaattagatgatatcggtattcaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22895264 |
ataatcaaaattagatgatatcggtattcaac |
22895295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 22895348 - 22895431
Alignment:
| Q |
401 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcagaa |
484 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895348 |
cacatactagcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcagaa |
22895431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 194 - 338
Target Start/End: Original strand, 15976019 - 15976163
Alignment:
| Q |
194 |
aaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttac |
293 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| || ||||||||||||||||| | || |||||||||| |||||||||||||||||| || || |
|
|
| T |
15976019 |
aaaatggtgaaaatattgaatcaaattcaaaccacaagacattgagcaaaaatacctatgtgttttcaacaaatgcaaatcacaagctgctcaaattcac |
15976118 |
T |
|
| Q |
294 |
tcaaattaatcttctgattctgcataatcaaaattagatgatatc |
338 |
Q |
| |
|
| |||| || ||| || |||||||||||||||| ||||||||||| |
|
|
| T |
15976119 |
tgaaatcaaacttatggttctgcataatcaaaactagatgatatc |
15976163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 15974579 - 15974687
Alignment:
| Q |
17 |
agataaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaag |
116 |
Q |
| |
|
||||||||||||||| || || |||| | ||||| ||||| ||||||||| ||| |||| |||||||||| | ||| |||| | |||| |||||||| |
|
|
| T |
15974579 |
agataaactataattttacaaacagactagataaaataaacatgataaaatgcttgtatcaaccaaagtaaaataaatcatgatacgttgaaattcaaag |
15974678 |
T |
|
| Q |
117 |
caaatttgc |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
15974679 |
taaatttgc |
15974687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 15975863 - 15975939
Alignment:
| Q |
47 |
ataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaattt |
123 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||||||| | ||| | | ||||||||||||||| |||||| |
|
|
| T |
15975863 |
ataaaataaacatgataaaatgcttacaacatccaaagtaaaagggatcataacactttgagattcaaagtaaattt |
15975939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 3873779 - 3874009
Alignment:
| Q |
47 |
ataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgc---------ccatcaatagag |
137 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
3873779 |
ataaaataaacatgataaaatacttacatcatccaaagtaaaatggatcatgatgctttaagattcaaagcaaatttgcaacttaacatcatccatagac |
3873878 |
T |
|
| Q |
138 |
agcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttg |
237 |
Q |
| |
|
| || ||||| |||||| |||||||||||| |||||| |||| ||| | ||| |||| | |||||||||||| | | |||||||||||| || ||| |
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|
| T |
3873879 |
aacattggcatgcttaattaaagctgcagatgcaaaaacggtaaaccacaaacatgaaaacggtgaaaatattgaatcaatttcaaaccacaagacattg |
3873978 |
T |
|
| Q |
238 |
agcaaaaatacctacatattatcaacaaatg |
268 |
Q |
| |
|
||||| |||||||| |||| |||||||||| |
|
|
| T |
3873979 |
agcaagaatacctatgtattttcaacaaatg |
3874009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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