View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_13 (Length: 477)
Name: NF1602_low_13
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 9402342 - 9402785
Alignment:
| Q |
18 |
tcattttattagtggaacttgtaatnnnnnnntatggatcaagaattatatgtatacttgtcattatttctatttacgtggaaactgaagggatgagttc |
117 |
Q |
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| T |
9402342 |
tcattttattagtggaacttgtgataaaaaaatatggaataagaattatatgtatacttgttattatttctatttacatggaaactgaagggatgagttc |
9402441 |
T |
|
| Q |
118 |
aatctcaatttgcttttttggggctcttttgaagaatccagttaccaagtttaaaaatgatggttgaacacacataattgacacaaatacagtacatcta |
217 |
Q |
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| T |
9402442 |
aatctcaatttgcttttttggggctcttttgaagaatccagttaccaagtttaaaaatgatggttgaacacacataattgacacaaatacagtacatcta |
9402541 |
T |
|
| Q |
218 |
cattgttaaccgtataaagtatttacggtgtgcaatacnnnnnnnnnnnnnnnnnnnaaatatagaggagaacttttatcacacaaaaattgagtggcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9402542 |
cattgttaaccgtataaagtatttacggtgtgcaatacttttttacttttattttttaaatatagaggagaacttttatcacacaaaaattgagtggcgt |
9402641 |
T |
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| Q |
318 |
aattaactaatttgactacttttccttc----nnnnnnnctaatttgactactttattaatcgttaaattgcatattattaaccacatttctagcatgaa |
413 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
9402642 |
aattaactaatttgactacttttccttcaaaaaaaaaaactaatttgactactttattaatcgttaaattgtatattattaaccacatttttagcatgaa |
9402741 |
T |
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| Q |
414 |
tagaaataaaaatctaaatctagtttggacgtcgttgcttcccc |
457 |
Q |
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| T |
9402742 |
tagaaataaaaatctaaatctagtttggatgtcgttgcttcccc |
9402785 |
T |
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