View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_14 (Length: 464)
Name: NF1602_low_14
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 213 - 451
Target Start/End: Original strand, 27389337 - 27389575
Alignment:
| Q |
213 |
ttctataaaatatgta-tagggtataaagttattgagtggtttaagtttaatactaaccaaatactacacacgcttgagtctttcatccataaaagcatt |
311 |
Q |
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| T |
27389337 |
ttctataaaatatgaaatagggtataaagttattgagtggtttaagtttaacactaaccacatactacacacacttgagtctttcatccataaaagcatt |
27389436 |
T |
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| Q |
312 |
ttttcttacaagagcatgtttctttaatgattattatcgacattaatagcaaatatctaaaattaggataaataagatcattttttattcaatcacttaa |
411 |
Q |
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| T |
27389437 |
tttt-ttacaagagcatgtttctttaatgattattatcgacattaatagcaaatatctaaaattaggataaataagatcattttttattcaatcacttaa |
27389535 |
T |
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| Q |
412 |
aaatcgtttaagagtcttgtaagtagaactcatatctttt |
451 |
Q |
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| T |
27389536 |
aaattgtttaagagtctcgcaagtagaactcatatctttt |
27389575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 339
Target Start/End: Original strand, 27382569 - 27382718
Alignment:
| Q |
183 |
tataatataaacttttaattcaacaatcaattctat-aaaatatgtatagggtataaagttattgagtggtttaagtttaatactaaccaaatactacac |
281 |
Q |
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| T |
27382569 |
tataatataaacttttaattcaacaaccaaatatttcaaaataggtgtagggtaaaaagttattgaatggtctaac------actaactaaatgctacac |
27382662 |
T |
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| Q |
282 |
acgcttgagtctttcatccataaaagcattttttcttacaagagcatgtttctttaat |
339 |
Q |
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| T |
27382663 |
acacttgagtctttcatctataaaagcattttt--ttacaagagcatgtttctttaat |
27382718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 27390628 - 27390720
Alignment:
| Q |
17 |
atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtcctctt-nnnnnnnntcatgtgtaacataactattcatagt |
108 |
Q |
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| T |
27390628 |
atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtccttttaaaaaaaactcatgtgtaacataactattcatagt |
27390720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 27382151 - 27382232
Alignment:
| Q |
83 |
tcatgtgtaacataactattcatagtttgttaagacatgaataacatcatatcaaataatttcatatctacttcaaaatatat |
165 |
Q |
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| T |
27382151 |
tcatttgtaacatagctattcataatctgttaagacattaataacatcatatcatat-atttcatatctacttcaaaatatat |
27382232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 27382057 - 27382114
Alignment:
| Q |
17 |
atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtcctctt |
74 |
Q |
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| T |
27382057 |
atgaaaatatcattatcaaaccaagttgtagagcacaactcatgtgtaacatcctctt |
27382114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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