View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_15 (Length: 462)

Name: NF1602_low_15
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_15
NF1602_low_15
[»] chr7 (7 HSPs)
chr7 (18-454)||(46121453-46121891)
chr7 (244-281)||(835093-835130)
chr7 (244-281)||(1200273-1200310)
chr7 (245-281)||(47879759-47879795)
chr7 (245-281)||(47914837-47914873)
chr7 (245-280)||(40098533-40098568)
chr7 (245-281)||(43392028-43392064)
[»] chr3 (4 HSPs)
chr3 (242-281)||(46174788-46174827)
chr3 (332-382)||(6976140-6976190)
chr3 (245-281)||(44761621-44761657)
chr3 (245-277)||(45135759-45135791)
[»] chr4 (5 HSPs)
chr4 (245-281)||(7007926-7007962)
chr4 (333-382)||(9163620-9163669)
chr4 (245-281)||(9163737-9163773)
chr4 (245-281)||(28542123-28542159)
chr4 (245-281)||(41321327-41321363)
[»] chr2 (6 HSPs)
chr2 (245-280)||(34027520-34027555)
chr2 (245-281)||(9120750-9120786)
chr2 (245-281)||(12408004-12408040)
chr2 (245-281)||(12420064-12420100)
chr2 (245-281)||(20605559-20605595)
chr2 (245-281)||(32125905-32125941)
[»] chr1 (6 HSPs)
chr1 (332-387)||(28337359-28337414)
chr1 (245-278)||(47781317-47781350)
chr1 (251-279)||(27873935-27873963)
chr1 (245-281)||(32588246-32588282)
chr1 (245-281)||(48525140-48525176)
chr1 (245-281)||(49197764-49197800)
[»] chr8 (3 HSPs)
chr8 (245-281)||(13477818-13477854)
chr8 (245-281)||(32711131-32711167)
chr8 (245-281)||(42734818-42734854)
[»] chr5 (3 HSPs)
chr5 (245-281)||(4771770-4771806)
chr5 (245-281)||(7016269-7016305)
chr5 (253-281)||(43319620-43319648)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 46121453 - 46121891
Alignment:
Q  18 gttggatttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121453 gttggatttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaa 46121552  T
Q  118 atatattgttgcaaagnnnnnnntattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaagaatttg 217  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46121553 atatattgttgcaaagaaaaaaatattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaggaatttg 46121652  T
Q  218 tacaattatcaatgtaactttttcggagtgtatttgattaggattttaaaagataatttttgttgnnnnnnngtattgttgattttaaaagattttaatg 317  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||    
T  46121653 tacaattattaatgtaactttttcggagtgtattggattaggattttaaaagataatttttgttgaaaaaaagtattgtggattttaaaagattttaatg 46121752  T
Q  318 acattttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaacttgattttgtggatt--taagatttgaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| | |    
T  46121753 acattttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttaaagaacttgattttgtggatttataagatttcaga 46121852  T
Q  416 ggtctatgaagtttaacattctcattcataatattcttc 454  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46121853 ggtctatgaagtttaacattctcattcataatattcttc 46121891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 835130 - 835093
Alignment:
Q  244 agtgtatttgattaggattttaaaagataatttttgtt 281  Q
    |||||||| |||||||||||||||||||||||||||||    
T  835130 agtgtattggattaggattttaaaagataatttttgtt 835093  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 1200310 - 1200273
Alignment:
Q  244 agtgtatttgattaggattttaaaagataatttttgtt 281  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1200310 agtgtattggattaggattttaaaagataatttttgtt 1200273  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 47879795 - 47879759
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47879795 gtgtattggattaggattttaaaagataatttttgtt 47879759  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 47914873 - 47914837
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914873 gtgtattggattaggattttaaaagataatttttgtt 47914837  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 40098568 - 40098533
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgt 280  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40098568 gtgtatttgattaggattttaaaagattatttttgt 40098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 43392028 - 43392064
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43392028 gtgtattggattaggattttaaaggataatttttgtt 43392064  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 46174827 - 46174788
Alignment:
Q  242 ggagtgtatttgattaggattttaaaagataatttttgtt 281  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46174827 ggagtgtattcgattaggattttaaaagataatttttgtt 46174788  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 6976190 - 6976140
Alignment:
Q  332 ctatcaatatttacaatttggattttaaaggattcatatcataagatttta 382  Q
    ||||||| ||||||||||||||||| || ||||| | ||||||||||||||    
T  6976190 ctatcaagatttacaatttggatttcaatggatttacatcataagatttta 6976140  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 44761621 - 44761657
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  44761621 gtgtattggattaggattttaaaggataatttttgtt 44761657  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 45135791 - 45135759
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttt 277  Q
    |||||||||||||||||||||||||| ||||||    
T  45135791 gtgtatttgattaggattttaaaagacaatttt 45135759  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 7007962 - 7007926
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7007962 gtgtattggattaggattttaaaagataatttttgtt 7007926  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 9163669 - 9163620
Alignment:
Q  333 tatcaatatttacaatttggattttaaaggattcatatcataagatttta 382  Q
    |||||| ||||||||||||||||| || ||||| ||| ||||||||||||    
T  9163669 tatcaagatttacaatttggatttcaatggatttataccataagatttta 9163620  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 9163773 - 9163737
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  9163773 gtgtattggattatgattttaaaagataatttttgtt 9163737  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 28542159 - 28542123
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  28542159 gtgtattggattaggattttaaaggataatttttgtt 28542123  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 41321363 - 41321327
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  41321363 gtgtattggattaggattttaaaagatgatttttgtt 41321327  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 34027520 - 34027555
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgt 280  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34027520 gtgtatttgattaggattttaaaagattatttttgt 34027555  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 9120786 - 9120750
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9120786 gtgtattagattaggattttaaaggataatttttgtt 9120750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 12408040 - 12408004
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12408040 gtgtattggattaggattttaaaggataatttttgtt 12408004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 12420100 - 12420064
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12420100 gtgtattggattaggattttaaaggataatttttgtt 12420064  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 20605595 - 20605559
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  20605595 gtgtattggattaggattttaaaggataatttttgtt 20605559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 32125941 - 32125905
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  32125941 gtgtattggattaggattttaaaggataatttttgtt 32125905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 28337359 - 28337414
Alignment:
Q  332 ctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaa 387  Q
    ||||||| ||||| |||||| |||| ||| |||| |||||||||||||||||||||    
T  28337359 ctatcaagatttaaaatttgaatttgaaatgatttatatcataagattttatagaa 28337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 47781350 - 47781317
Alignment:
Q  245 gtgtatttgattaggattttaaaagataattttt 278  Q
    ||||||| ||||||||||||||||||||||||||    
T  47781350 gtgtattggattaggattttaaaagataattttt 47781317  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 27873935 - 27873963
Alignment:
Q  251 ttgattaggattttaaaagataatttttg 279  Q
    |||||||||||||||||||||||||||||    
T  27873935 ttgattaggattttaaaagataatttttg 27873963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 32588246 - 32588282
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  32588246 gtgtattggattaggatcttaaaagataatttttgtt 32588282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 48525176 - 48525140
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  48525176 gtgtattggattaggattttaaaggataatttttgtt 48525140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 49197764 - 49197800
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  49197764 gtgtattggattaggattttaaaagacaatttttgtt 49197800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 13477818 - 13477854
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  13477818 gtgtattggattaggattttaaaggataatttttgtt 13477854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 32711131 - 32711167
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  32711131 gtgtattggattaggattttaaaggataatttttgtt 32711167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 42734818 - 42734854
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  42734818 gtgtattggattaggattttaaaggataatttttgtt 42734854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 4771770 - 4771806
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||||||||||||||||||| || ||||||||||    
T  4771770 gtgtatttgattaggattttaaaggacaatttttgtt 4771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 7016269 - 7016305
Alignment:
Q  245 gtgtatttgattaggattttaaaagataatttttgtt 281  Q
    ||||||||||||||||||||||| || ||||||||||    
T  7016269 gtgtatttgattaggattttaaaggacaatttttgtt 7016305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 43319648 - 43319620
Alignment:
Q  253 gattaggattttaaaagataatttttgtt 281  Q
    |||||||||||||||||||||||||||||    
T  43319648 gattaggattttaaaagataatttttgtt 43319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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