View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_16 (Length: 455)
Name: NF1602_low_16
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 124 - 381
Target Start/End: Original strand, 34549069 - 34549326
Alignment:
| Q |
124 |
attctgaatggataaaagtcttccagattcaatgcctcaacatattgcttatggctgaagctagttcttgttctctgagattttcattttccatctataa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549069 |
attctgaatggataaaagtcttccagattcaatgcctcaacatattgcttatggctgaagctagttcttgttctctgagattttcattttccatctataa |
34549168 |
T |
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| Q |
224 |
cacctttttatgaaaatcgtcataatatagggataatgcaatgcaaccttggagttgaaaagatcaggtatcaaatgagtttgtagttctttaatttaag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34549169 |
cacctttttatgaaaatcgtcataatatagggataatgcaatgcaaccttggagttgaaaagatgaggtatcaaatgagtttgtagttctttaatttaag |
34549268 |
T |
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| Q |
324 |
cagaaaagaaatcactcatatcaattaagatgtggagaaaaggattttaagaatgttt |
381 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34549269 |
cagaaaagaaatcactcatatcaattaaagtgtggagaaaaggattttaagaatgttt |
34549326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 34548918 - 34549018
Alignment:
| Q |
15 |
aaaaagtatatcaaccttttgatcaatgttaattgtaatcttatcaatttacttactatatactttagcaaatgattcttccttatttaaacatatatat |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548918 |
aaaaagtatatcaaccttttcatcaatgttaattgtaatcttatcaatttacttactatatactttagcaaatgattcttccttatttaaacatatatat |
34549017 |
T |
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| Q |
115 |
a |
115 |
Q |
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| |
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|
| T |
34549018 |
a |
34549018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 34549356 - 34549405
Alignment:
| Q |
406 |
atatcatagaagaaaagtagtaaatgtaattccaatttcttagaaatata |
455 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34549356 |
atatgatagaagaaaagtagtaaatgtaattccaagttcttagaaatata |
34549405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 34560718 - 34560758
Alignment:
| Q |
258 |
aatgcaatgcaaccttggagttgaaaagatcaggtatcaaa |
298 |
Q |
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| T |
34560718 |
aatgcaatgcaaccttacagttgaaaagatcaggtatcaaa |
34560758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 34560777 - 34560809
Alignment:
| Q |
296 |
aaatgagtttgtagttctttaatttaagcagaa |
328 |
Q |
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| T |
34560777 |
aaatgagtttgtagttctttaatttaagcagaa |
34560809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 36084933 - 36085028
Alignment:
| Q |
128 |
tgaatggataaaagtcttccagattcaatgcctcaacatattgcttatggctgaagctagttcttgttctctgagattttcattttccatctataa |
223 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
36084933 |
tgaatggataaatgtcttccagagtcaatgcctcaacgtattgcttatggctgaaactacttcttgttctctgagattctcattttccatctataa |
36085028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 36085078 - 36085130
Alignment:
| Q |
243 |
tcataatatagggataatgcaatgcaaccttggagttgaaaagatcaggtatc |
295 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||||||| ||||| |
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| T |
36085078 |
tcataatatagggataatgcaatgcaaccttgcagattaaaagatcacgtatc |
36085130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 136063 - 135974
Alignment:
| Q |
135 |
ataaaagtcttccagattcaatgcctcaacatattgcttatggctgaagctagttcttgttctctgagattttcattttccatctataaca |
225 |
Q |
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||||||||||||| || |||||||||| ||||||| |||||||||||||||||| |||| | |||||||||| || ||||||||| |||| |
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| T |
136063 |
ataaaagtcttcccgactcaatgcctccacatatttcttatggctgaagctagtccttg-tgtctgagatttgcacattccatctacaaca |
135974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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