View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_18 (Length: 435)

Name: NF1602_low_18
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_18
NF1602_low_18
[»] chr7 (2 HSPs)
chr7 (11-419)||(351992-352401)
chr7 (11-374)||(10578782-10579187)
[»] chr1 (2 HSPs)
chr1 (11-279)||(24577324-24577594)
chr1 (286-373)||(24577073-24577160)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 352401 - 351992
Alignment:
Q  11 cacagatcttgtaaggtcctgagattgttctttccgccaaaagtctctaacttctgtagggtgagatgttgctaaagaagaaaatgaagttctcgacgct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  352401 cacagatcttgtaaggtcctgagattgttctttccgccaaaagtctctaacttctgtagggtgagatgttgctaaagaagaaaatgaagttctcgacgct 352302  T
Q  111 agagccaaacaaa-tatgccaaagctatcaccaacaacgagacgatgtattgaccgcataggggtgactttatgaaatttcagaatgaaaagggctggag 209  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  352301 agagccaaacaaaatatgccaaagctatcaccaacaacaagacgatgtattgaccgcataggggtgactttatgaaatttcagaatgaaaagggctggag 352202  T
Q  210 tgcagattctgtttcacaataaaatgatgttgaaaattagctttgagccatttgtcaaggagaactaacaatttcacatcagaatttaacaacattatag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  352201 tgcagattctgtttcacaataaaatgatgttgaaaattagctttgagccatttgtcaaggagaactaacaatttcgcatcagaatttaacaacattatag 352102  T
Q  310 actaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaatatattcnnnnnnncatgatactaacatagcactgt 409  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||    
T  352101 actaattacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaatatattctttttttcatgatactaacatagtactgt 352002  T
Q  410 tattaaaaag 419  Q
    ||||||||||    
T  352001 tattaaaaag 351992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 10579187 - 10578782
Alignment:
Q  11 cacagatcttgtaaggtcctgagattgttctttccgccaaaagtctctaacttctgtagggtgagatgttgctaaagaagaaaatgaagttctcgacgct 110  Q
    ||||||||| |||||||| |||| |||||||||  |||||||||||| | |||||| ||||||| |||||| || |||||||||| |||||||||||||     
T  10579187 cacagatctcgtaaggtcttgagtttgttctttatgccaaaagtctccagcttctgcagggtgatatgttgttatagaagaaaataaagttctcgacgcc 10579088  T
Q  111 agagccaaacaa-atatgccaaagctatcaccaacaacgagacgatgtattgaccgcataggggtgactttatgaaatttcagaatgaaaagggctggag 209  Q
    ||||||| | || |||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10579087 agagccatataacatatgccaaagcgatcacgaacaacaagacgatatattgaccgcataggggtgactttatggaatttcagaatgaaaagggctggag 10578988  T
Q  210 tg------------------cagattctgtttcacaataaaatgatgttgaaaattagc-tttgagccatttgtcaaggagaactaacaatttca----- 285  Q
    ||                  ||||||||||||||||||||||| |||| ||| ||||   |||||| ||||||||||||||||||||||  || |         
T  10578987 tggagatgataataaagagccagattctgtttcacaataaaatcatgtcgaatattaaaatttgagtcatttgtcaaggagaactaacatcttaaaacac 10578888  T
Q  286 -------------catcagaatttaacaacattatag----actaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagct 368  Q
                 ||||||||||| ||||||||||||    | ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10578887 aacaatgctacagcatcagaatttgacaacattatagcgtaaataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagct 10578788  T
Q  369 gccaat 374  Q
    ||||||    
T  10578787 gccaat 10578782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 24577594 - 24577324
Alignment:
Q  11 cacagatcttgtaaggtcctgagattgttctttccgccaaaagtctctaacttctgtagggtgagatgttgctaaagaagaaaatgaagttctcgacgct 110  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||| |||||| || |||| |||||||||||||||||||| ||||||||||| |     
T  24577594 cacagatcttgtaaggtcttgagtttgttctttatgccaaaagtctctagcttctgcagcgtgatatgttgctaaagaagaaaataaagttctcgacacc 24577495  T
Q  111 agagccaaacaa-atatgccaaagctatcaccaacaacgagacgatgtattgaccgcataggggtgactttatgaaatttcagaatgaaaagggctggag 209  Q
    ||||||| |  | |||||||||||| ||||| |||||| ||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||| |||||    
T  24577494 agagccatagtacatatgccaaagcgatcacgaacaacaagacgatatattgatcgcatgggggtgactttatggaatttcagaatgaaaagggttggag 24577395  T
Q  210 tgcagattctgtttcacaataaaatgatgttgaaaatt-agctttgagccatttgtcaaggagaactaaca 279  Q
    || |||||||||||||||||||||| |||| ||| ||| |  |||||| |||||  |||||||||||||||    
T  24577394 tggagattctgtttcacaataaaatcatgtcgaatattaaaatttgagtcatttcccaaggagaactaaca 24577324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 24577160 - 24577073
Alignment:
Q  286 catcagaatttaacaacattatagactaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaa 373  Q
    |||||||| || ||||||||||||| |||||||||   | | ||||||||||||| |||| |||||||| |||| |||||| ||||||    
T  24577160 catcagaagttgacaacattatagagtaaatacgggcaccatgaacaatagcaatatgttaaagttctgttacaatcttagttgccaa 24577073  T

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