View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_19 (Length: 409)
Name: NF1602_low_19
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 54 - 409
Target Start/End: Complemental strand, 3311257 - 3310900
Alignment:
| Q |
54 |
attatgtaatatcgacgaccctaaaaggcacccattaaacatcctagaatgagggtggtggggtgtgttagttgatgattatactgatattttcggttgc |
153 |
Q |
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| T |
3311257 |
attatgtaatatcgacaaccctaaaagttacccattaaacaacctagaatgatggtggtggggtgtgttagttgatgattatactgatattttcggttgc |
3311158 |
T |
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| Q |
154 |
acaaatgggaaaagcaaaggagcatttaagagtagtgtctctttcttgacctctcacacacgccacacacaacatgtacaaaaggctgctccatgtccaa |
253 |
Q |
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| T |
3311157 |
gcaagtgggaaaagcaaaggagcatttaagagtagtgtctctttcttgacctctcacacacgccacacacaacatgtacaaaaggctgctccatgtccaa |
3311058 |
T |
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| Q |
254 |
gcctcatatttgtcatttatgaagatatttttacagttgaaaaccctctcactcagacctagtttatagttcaatctgcaaaagcagcagcactcatttc |
353 |
Q |
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| T |
3311057 |
gcctcatatttgtcatttatgaagatatttttacagttgaaaaccctctcactcagacctagtttatagtgcaatctgcaaaagcagcaacactcatttc |
3310958 |
T |
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| Q |
354 |
tcctctctatcctcacatatcaatcatcag--tttaacgagatctgatgacatgccct |
409 |
Q |
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| T |
3310957 |
tcctctctatcctcacatatcagttatcagtttttaacgagatctgatgacatgccct |
3310900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 3311348 - 3311280
Alignment:
| Q |
6 |
tacaaatatcatttctccgtcattcaagtgattaacataaccctttcgattatgtaatatcgacgaccct |
75 |
Q |
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| T |
3311348 |
tacaaatat-atttctccgtcgtttaagtgattaacataaccctttcaattatgtaatatcgacaaccct |
3311280 |
T |
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