View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_2 (Length: 825)

Name: NF1602_low_2
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_2
NF1602_low_2
[»] chr3 (16 HSPs)
chr3 (22-359)||(33586681-33587018)
chr3 (390-783)||(33594372-33594786)
chr3 (390-783)||(33601503-33601917)
chr3 (390-783)||(33587200-33587614)
chr3 (15-359)||(33593853-33594190)
chr3 (15-359)||(33600984-33601321)
chr3 (592-768)||(33608200-33608376)
chr3 (592-771)||(33615984-33616163)
chr3 (592-767)||(33626481-33626656)
chr3 (271-354)||(33561697-33561780)
chr3 (762-806)||(33587614-33587658)
chr3 (762-806)||(33594786-33594830)
chr3 (762-806)||(33601917-33601961)
chr3 (272-352)||(33607998-33608078)
chr3 (616-747)||(33621384-33621515)
chr3 (683-744)||(33562050-33562111)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 359
Target Start/End: Original strand, 33586681 - 33587018
Alignment:
22 caagcgaggacaatgacattttgttttgttttcgaaaaatgtgtctgttagttagagtgttagaatttggattaagtagttattatttttcagcattact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
33586681 caagcgaggacaatgacattttgttttgttttcgaaaaatgtgtctgttagttagagtgttagaatttggatttagtagttattatttttcagcattact 33586780  T
122 aacnnnnnnncctctgagctaatttatctatactcctaggtagtaagaagagctactaattggaaagcagatacacagagaggacaaggttgaaaatggc 221  Q
    |||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33586781 aactttttttcctctgagctaatttatctatactcctaggtggtaagaagagctactaattggaaagcagatacacagagaggacaaggttgaaaatggc 33586880  T
222 aggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcagttatcattacttgtatcgttgctgcatctagtggactc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
33586881 aggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcggttatcattacttgtatcgttgctgcatctagtggactc 33586980  T
322 atttttggatatgacattgggatttcaggttttcttcc 359  Q
    ||||||||||||||||||||||||||||||||||||||    
33586981 atttttggatatgacattgggatttcaggttttcttcc 33587018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 390 - 783
Target Start/End: Original strand, 33594372 - 33594786
Alignment:
390 taaaatgtcaaaatcattagagaaattaacataattgcacaagctcaataatcttcaaatttaaaactttta--gtagtacaa-------------ttgg 474  Q
    ||||||||||||||||||| |||||||||||||||||||||||||   ||||| || ||||||||||| |||  |||| ||||             ||||    
33594372 taaaatgtcaaaatcattaaagaaattaacataattgcacaagct---taatcatccaatttaaaactattatagtagaacaaatctaaataggttttgg 33594468  T
475 acaaagtctaattgcat---------gatgctatacattatttttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 565  Q
    |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33594469 acaaagtctaattgcattttaatcatgatgctatacattatttttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 33594568  T
566 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33594569 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 33594668  T
666 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33594669 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 33594768  T
766 agtcactgcagctatcgg 783  Q
    ||||||||||||||||||    
33594769 agtcactgcagctatcgg 33594786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 390 - 783
Target Start/End: Original strand, 33601503 - 33601917
Alignment:
390 taaaatgtcaaaatcattagagaaattaacataattgcacaagctcaataatcttcaaatttaaaactttta--gtagtacaa-------------ttgg 474  Q
    ||||||||||||||||||| |||||||||||||||||||||||||   ||||| || ||||||||||| |||  |||| ||||             ||||    
33601503 taaaatgtcaaaatcattaaagaaattaacataattgcacaagct---taatcatccaatttaaaactattatagtagaacaaatctaaataggttttgg 33601599  T
475 acaaagtctaattgcat---------gatgctatacattatttttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 565  Q
    |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33601600 acaaagtctaattgcattttaatcatgatgctatacattatttttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 33601699  T
566 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33601700 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 33601799  T
666 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33601800 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 33601899  T
766 agtcactgcagctatcgg 783  Q
    ||||||||||||||||||    
33601900 agtcactgcagctatcgg 33601917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 390 - 783
Target Start/End: Original strand, 33587200 - 33587614
Alignment:
390 taaaatgtcaaaatcattagagaaattaacataattgcacaagctcaataatcttcaaatttaaaactttta--gtagtacaa-------------ttgg 474  Q
    ||||||||||||||||||| |||||||||||||||||||||||||   ||||| || ||||||||||| |||  |||| ||||             ||||    
33587200 taaaatgtcaaaatcattaaagaaattaacataattgcacaagct---taatcatccaatttaaaactattatagtagaacaaatctaaataggttttgg 33587296  T
475 acaaagtctaattgcat---------gatgctatacattatttttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 565  Q
    |||||||||||||||||         |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33587297 acaaagtctaattgcattttaatcatgatgctatacattaattttacattttatcttcaaaatgtacttggagaagaaccaaagtcataaagctcaccct 33587396  T
566 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33587397 ttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggta 33587496  T
666 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33587497 ctgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaa 33587596  T
766 agtcactgcagctatcgg 783  Q
    ||||||||||||||||||    
33587597 agtcactgcagctatcgg 33587614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 33593853 - 33594190
Alignment:
15 tcaacatcaagcgaggacaatgacattttgttttgttttcgaaaaatgtgtctg-----ttagttagagtgttagaatttggattaagtagttattattt 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||     |||||||||||||| ||||||||||||||||||||||||||    
33593853 tcaacatcaagcgaggacaatgacattttgttttgttttccaaaaatgtgtttgcattgttagttagagtgttggaatttggattaagtagttattattt 33593952  T
110 ttcagcattactaacnnnnnnncctctgagctaatttatctatactcctaggtagtaagaagagctactaattggaaagcagatacacagaga--ggaca 207  Q
    |||||||| ||||||       ||||||||||   |||||||||||||||||||||||||||||||            ||||||||||||| |  ||| |    
33593953 ttcagcatcactaactttttttcctctgagct---ttatctatactcctaggtagtaagaagagctt-----------gcagatacacagacacaggaga 33594038  T
208 aggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcagttatcattacttgtatcgttgctg 307  Q
    |||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
33594039 aggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcattacttgtatcgttgctg 33594138  T
308 catctagtggactcatttttggatatgacattgggatttcaggttttcttcc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
33594139 catctagtggactcatttttggatatgacattgggatttcaggttttcttcc 33594190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 33600984 - 33601321
Alignment:
15 tcaacatcaagcgaggacaatgacattttgttttgttttcgaaaaatgtgtctg-----ttagttagagtgttagaatttggattaagtagttattattt 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||     |||||||||||||| ||||||||||||||||||||||||||    
33600984 tcaacatcaagcgaggacaatgacattttgttttgttttccaaaaatgtgtttgcattgttagttagagtgttggaatttggattaagtagttattattt 33601083  T
110 ttcagcattactaacnnnnnnncctctgagctaatttatctatactcctaggtagtaagaagagctactaattggaaagcagatacacagaga--ggaca 207  Q
    |||||||| ||||||       ||||||||||   |||||||||||||||||||||||||||||||            ||||||||||||| |  ||| |    
33601084 ttcagcatcactaactttttttcctctgagct---ttatctatactcctaggtagtaagaagagctt-----------gcagatacacagacacaggaga 33601169  T
208 aggttgaaaatggcaggtgggggatttgccattgatgcaccttcgaatggcttcgacggaaatataacactctcagttatcattacttgtatcgttgctg 307  Q
    |||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
33601170 aggttgaaaatggcaggtggagggtttgccattgatgcaccttccaatggctttgatggaaagataacactctcagttatcattacttgtatcgttgctg 33601269  T
308 catctagtggactcatttttggatatgacattgggatttcaggttttcttcc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
33601270 catctagtggactcatttttggatatgacattgggatttcaggttttcttcc 33601321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 592 - 768
Target Start/End: Original strand, 33608200 - 33608376
Alignment:
592 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 691  Q
    |||||||||||| ||||| |||||||| |||||  | |||||||| |||||||||||||| |||||||||||| ||||||| |||||||| |||||||||    
33608200 ttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgtat 33608299  T
692 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagt 768  Q
    || ||||| |  ||||| || |||||||| ||||| ||||||||||| ||||||||| | |||| ||||||||||||    
33608300 gatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcccttgcagctagcaaagt 33608376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 592 - 771
Target Start/End: Original strand, 33615984 - 33616163
Alignment:
592 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 691  Q
    |||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| |||||||||||  || | ||||| |||||||| |||||||||    
33615984 ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat 33616083  T
692 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcac 771  Q
    || ||||| || |||||  | |||||||| ||||| ||||||||||| ||||||||| |  ||| |||||||||||||||    
33616084 gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcac 33616163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 592 - 767
Target Start/End: Original strand, 33626481 - 33626656
Alignment:
592 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 691  Q
    |||||||||||| ||||| |||  ||||||||| || |||||||||||||| |||||||||||||||| ||||||| | || || |||||||||||||||    
33626481 ttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgtgtat 33626580  T
692 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaag 767  Q
    || ||||| || ||||| || || ||||| ||||| ||||||||||| ||  ||||  | ||||||||||||||||    
33626581 gatagtcaaatattgacattattcacgtcttctctttatctagctggatttatgtcgtcacttgtagctagcaaag 33626656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 33561697 - 33561780
Alignment:
271 ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtttt 354  Q
    ||||||||||||||| |||| ||||| || ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||    
33561697 ataacactctcagttgtcatcacttgcattgttgcagcatctagtggactcatttttggatatgaccttggaatttcaggtttt 33561780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 762 - 806
Target Start/End: Original strand, 33587614 - 33587658
Alignment:
762 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
33587614 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 33587658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 762 - 806
Target Start/End: Original strand, 33594786 - 33594830
Alignment:
762 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
33594786 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 33594830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 762 - 806
Target Start/End: Original strand, 33601917 - 33601961
Alignment:
762 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
33601917 gcaaagtcactgcagctatcggtcgaagaaattccatcgtgttgg 33601961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 33607998 - 33608078
Alignment:
272 taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt 352  Q
    ||||||| ||| | |||||||| || ||||||||||| || ||||| ||  ||||||||||||||||||| ||||||||||    
33607998 taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt 33608078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 747
Target Start/End: Original strand, 33621384 - 33621515
Alignment:
616 gccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgttt 715  Q
    ||||||||| || ||||| |||||| | ||||| ||||| |||||||||||| | || || ||||| ||||||||||| ||||| || ||||| || ||     
33621384 gccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgtgtatgatagtcaaatattgacattattc 33621483  T
716 acgtcctctctgtatctagctgggttagtgtc 747  Q
    || || || || ||||||||||| || |||||    
33621484 acatcttcactttatctagctggatttgtgtc 33621515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 744
Target Start/End: Original strand, 33562050 - 33562111
Alignment:
683 tgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagt 744  Q
    ||||||||||| ||||| ||||| || || || |||||||| ||||||||||||||||||||    
33562050 tgtgtgtatgatagtcaaatgttaacattattcacgtcctcactgtatctagctgggttagt 33562111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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