View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_21 (Length: 393)
Name: NF1602_low_21
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_21 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 32239716 - 32240086
Alignment:
| Q |
7 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttga |
106 |
Q |
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||||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
32239716 |
catcatcattatttatagcaaaaggtggataacataaacgaaattgccactgctaacagcgatgggttagttttatttcgaattggaaaaggggatttga |
32239815 |
T |
|
| Q |
107 |
agctatgaatatagtctaaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239816 |
agctatgaatatagtctaaattttattaacagaagttatgatatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
32239915 |
T |
|
| Q |
207 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239916 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
32240015 |
T |
|
| Q |
307 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240016 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
32240086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 32239528 - 32239475
Alignment:
| Q |
324 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32239528 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
32239475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 27118092 - 27118442
Alignment:
| Q |
7 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttga |
106 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| || |||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
27118092 |
catcatgattatttatagcgaaagatggatgacataaacgaaattgccactgttaatagcgatgggttaattttatttccaattggaaaaggggatttta |
27118191 |
T |
|
| Q |
107 |
agctatgaatatagtctaaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
206 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||| ||||||||| |||| ||||||| |
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| T |
27118192 |
agctatgaatacagtctaaaatttattaacagaagttatgatatggttgaa---tttcgaacatcatgtgatgtttatcaatttgtgtgattctgtttcc |
27118288 |
T |
|
| Q |
207 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
306 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||| ||| || |
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| T |
27118289 |
aattaggaaatgggattgtagaagacgatagaacatagagc--cagaa------cgagagcagaggaacggtggttgttacagtgtgtttcactgtgact |
27118380 |
T |
|
| Q |
307 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatc |
368 |
Q |
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|||||||| ||||| |||||||| ||| | || | ||||| ||||||| ||||||||||| |
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| T |
27118381 |
ttcataaattgatgctttttaattctaactctcgaaattttaattgccacatgtcatccatc |
27118442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 27117852 - 27117799
Alignment:
| Q |
324 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
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|||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| |
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| T |
27117852 |
tttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaagag |
27117799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 7266895 - 7267029
Alignment:
| Q |
7 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagcc--------atgggttagttttatttccaattggaaaagg |
98 |
Q |
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|||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||| |
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| T |
7266895 |
catcattattatttatagcgaaaggtggatgacataaacaaaattgtcactgctaatacctctgtagagatgggttaattttatttccaattgaaaaagg |
7266994 |
T |
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| Q |
99 |
ggatttgaagctatgaatatagtctaaattttatt |
133 |
Q |
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||||||||||||||||||| ||| ||||||||||| |
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| T |
7266995 |
ggatttgaagctatgaataaagtttaaattttatt |
7267029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 23011041 - 23010988
Alignment:
| Q |
324 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23011041 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
23010988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 53371909 - 53371962
Alignment:
| Q |
324 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53371909 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
53371962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 3028 - 3081
Alignment:
| Q |
324 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagag |
377 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3028 |
tttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaagag |
3081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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