View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_24 (Length: 383)
Name: NF1602_low_24
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 146 - 363
Target Start/End: Original strand, 52530914 - 52531134
Alignment:
| Q |
146 |
ggaaataaatgaatgacattacatatga---tcaggggaagaagtttcataagttcattgaatagaaataagagtttgaaaaatgaacaattagcataag |
242 |
Q |
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| T |
52530914 |
ggaaataaatgaatgacattacatatgatgatcaggggaagaagtttcataagttcattgaatagaaataagagtttgaaaaatgaacaattagcataag |
52531013 |
T |
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| Q |
243 |
aatgaagaatctgacctgaactataagaggaggaacatctaagaaactttgagattccaccttataagtgaactttctccatgacttgtatggcaactta |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52531014 |
aatgaagaatctgacctgaactataagaggaggaacatctaagaaactttgagattccaccttataagtgaactttctccatgacttgtttggcaactta |
52531113 |
T |
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| Q |
343 |
gaaggttcaagtaattcttga |
363 |
Q |
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| T |
52531114 |
gaaggttcaagtaattcttga |
52531134 |
T |
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