View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1602_low_25 (Length: 374)
Name: NF1602_low_25
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_25 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 44799968 - 44800316
Alignment:
| Q |
17 |
ctttcaatacagagaaaagctcctataagatactggttaatcctgcatcatcgctcaactctaaaatttccactataaatatattaatgttttgaaactc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
44799968 |
ctttcaatatagagaaaagctcctataagatactggttaatcctgcatcatcgttcagctctaaaatctccactataaatatattaatgttttgaaactc |
44800067 |
T |
|
| Q |
117 |
aacttacttgaatcttactatgtcattttgtcctagattaatggaagattaatgagattttgtagttggtctgctcggttgtttttgttgtgtcattctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44800068 |
aacttacttgaatcttactatgtcattttgtcccagattaatggaagattaatgagattttgtagttggtctgctcggttgtttttgttgtgtcattctt |
44800167 |
T |
|
| Q |
217 |
cggctgtcatgctcatcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgcttgagcgctgtccga |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
44800168 |
cggctgtcatg----tcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcagaagttggaattggatcaagctgcttgagcgttgttcga |
44800263 |
T |
|
| Q |
317 |
tacacaacaattggtgaaatacttctctgcaatcgcggtatagtataatctac |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44800264 |
tacacaacaattggtgaaatacttctctgcaatcgcggtatagtagaatctac |
44800316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 21887208 - 21886856
Alignment:
| Q |
17 |
ctttcaatacagagaaaagctcctataagatactggttaatcctgcatcatcgctcaactctaaaatttccactataaatatattaatgttttgaaactc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
21887208 |
ctttcaatatagagaaaagctcctataagataccggttaatcctgcatcatcgttcagctctaaaatttccactataaatatattaatgttttgaaagtc |
21887109 |
T |
|
| Q |
117 |
aacttacttgaatcttactatgtcattttgtcctagattaatggaagattaatgagattttgtagttggtctgctcggttgtttttgttgtgtcattctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |
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|
| T |
21887108 |
aacttacttgaatcttactatgtcattctgtcctagattaatggaaggttaatgagattttgtagctggtctgcttggttgtttttattgtgtcattctt |
21887009 |
T |
|
| Q |
217 |
cggctgtcatgctcatcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgcttgagcgctgtccga |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||| | ||||||| |
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|
| T |
21887008 |
cggctgtcatgctcatctgcaccggtgtttttgtactagttaggatgatttatgtgtctcgtaagttggaattggatcaagttgcttgagtgttgtccga |
21886909 |
T |
|
| Q |
317 |
tacacaacaattggtgaaatacttctctgcaatcgcggtatagtataatctac |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21886908 |
tacacaacagttggtgaaatacttctctgcaatcgcggtgtagtagaatctac |
21886856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 103 - 369
Target Start/End: Complemental strand, 37478451 - 37478185
Alignment:
| Q |
103 |
atgttttgaaactcaacttacttgaatcttactatgtcattttgtcctagattaatggaagattaatgagattttgtagttggtctgctcggttgttttt |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37478451 |
atgttttgaaactcaacttgcttgaatcttactatgtcattctgtcctagattaatggaaggttaatgagattttgtagctggtctgctcggttgttttt |
37478352 |
T |
|
| Q |
203 |
gttgtgtcattcttcggctgtcatgctcatcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37478351 |
attgtgtcattcttcggctgtcatgctcatctgcacctgtgtttttgcagtggttaggatggtttatgtgtcttggaagttggaattggatcaagctgct |
37478252 |
T |
|
| Q |
303 |
tgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggtatagtataatctac |
369 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37478251 |
tgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtagaatctac |
37478185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 37478496 - 37478457
Alignment:
| Q |
21 |
caatacagagaaaagctcctataagatactggttaatcct |
60 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37478496 |
caatatagagaaaagctcctataagatactggttaatcct |
37478457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 103 - 369
Target Start/End: Complemental strand, 1685702 - 1685436
Alignment:
| Q |
103 |
atgttttgaaactcaacttacttgaatcttactatgtcattttgtcctagattaatggaagattaatgagattttgtagttggtctgctcggttgttttt |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1685702 |
atgttttgaaactcaacttgcttgaatcttactatgtcattctgtcctagattaatggaaggttaatgagattttgtagctggtctgctcggttgttttt |
1685603 |
T |
|
| Q |
203 |
gttgtgtcattcttcggctgtcatgctcatcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1685602 |
attgtgtcattcttcggctgtcatgctcatctgcaccggtgtttttgcagtggttaggatggtttatgtgtctcggaagttggaattggatcaagctgct |
1685503 |
T |
|
| Q |
303 |
tgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggtatagtataatctac |
369 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1685502 |
tgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtagaatctac |
1685436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 156 - 369
Target Start/End: Original strand, 39954227 - 39954441
Alignment:
| Q |
156 |
aatggaagattaatgagattttgtagttggtctgctcggttgtttttgtt-gtgtcattcttcggctgtcatgctcatcttcaccggtgtttttgcagtg |
254 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||| ||||||||| || |||||| |||| || |||| |||| || | ||| ||||||||||||||| |
|
|
| T |
39954227 |
aatggaaggttaatgagattttatagctggtctgctccgttgtttttttttgtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcagtg |
39954326 |
T |
|
| Q |
255 |
gttagaatggtttatgtgtctcggaagttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcgg |
354 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
39954327 |
gttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagttagtgaaatacttctctgcaatcgcgg |
39954426 |
T |
|
| Q |
355 |
tatagtataatctac |
369 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
39954427 |
tgtagtagaatctac |
39954441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 1685741 - 1685708
Alignment:
| Q |
27 |
agagaaaagctcctataagatactggttaatcct |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1685741 |
agagaaaagctcctataagatactggttaatcct |
1685708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 103 - 369
Target Start/End: Complemental strand, 52038043 - 52037777
Alignment:
| Q |
103 |
atgttttgaaactcaacttacttgaatcttactatgtcattttgtcctagattaatggaagattaatgagattttgtagttggtctgctcggttgttttt |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52038043 |
atgttttgaaactcaacttgcttgaatcttactatgtcattctgtcctagattaatggaaggttaatgagattttgtagctggtctgctcggttgttttt |
52037944 |
T |
|
| Q |
203 |
gttgtgtcattcttcggctgtcatgctcatcttcaccggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52037943 |
attgtgtcattcttcggctgtcatgctcatctgcaccagtgtttttgcagtggttaggatggtttatgtgtctaggaagttggaattggatcaagctgct |
52037844 |
T |
|
| Q |
303 |
tgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgcggtatagtataatctac |
369 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
52037843 |
tgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgcggtgtagtagaatctac |
52037777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 52038082 - 52038049
Alignment:
| Q |
27 |
agagaaaagctcctataagatactggttaatcct |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52038082 |
agagaaaagctcctataagatactggttaatcct |
52038049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 153 - 369
Target Start/End: Original strand, 41053247 - 41053463
Alignment:
| Q |
153 |
attaatggaagattaatgagattttgtagttggtctgctcggttgtttttgttgtgtcattcttcggctgtcatgctcatcttcaccggtgtttttgcag |
252 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41053247 |
attaatggaagtttaatgagattttgtagctggtctgctcggttgtttttattgtgtcattcttcggctgtcatgctcatctgcaccggtgtttttgcag |
41053346 |
T |
|
| Q |
253 |
tggttagaatggtttatgtgtctcggaagttggaattggatcaagctgcttgagcgctgtccgatacacaacaattggtgaaatacttctctgcaatcgc |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
41053347 |
tggttaggatggtttatgtgtctcggaagttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttatctgtaatcgc |
41053446 |
T |
|
| Q |
353 |
ggtatagtataatctac |
369 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
41053447 |
ggtgtagtataatctac |
41053463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 41053165 - 41053253
Alignment:
| Q |
17 |
ctttcaatacagagaaaagctcctataagatactggttaatcctgcatcatcgctcaactctaaaatttccactataaatatattaatg |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41053165 |
ctttcaatatagagaaaagctcctataagatactggttaatcctgcatcatcgttcagctctaaaatttccactataaatatattaatg |
41053253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 45208902 - 45208976
Alignment:
| Q |
50 |
tggttaatcctgcatcatcgctcaactctaaaatttccactataaatatattaatgttttgaaactcaacttacttg |
126 |
Q |
| |
|
||||||||| |||||| || ||| ||||||||||| |||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
45208902 |
tggttaatcttgcatcggcgttcagctctaaaatttaaacta--aatatatgaatgttttgaaactcaactcacttg |
45208976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 43382073 - 43382129
Alignment:
| Q |
240 |
ggtgtttttgcagtggttagaatggtttatgtgtctcggaagttggaattggatcaagctgctt |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43382073 |
ggtgtttttgcagtggttaggatggtttatgtgtc-------ttggaattggatcaagctgctt |
43382129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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