View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_26 (Length: 369)
Name: NF1602_low_26
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 172 - 356
Target Start/End: Original strand, 2213462 - 2213646
Alignment:
| Q |
172 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
271 |
Q |
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| T |
2213462 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgattgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
2213561 |
T |
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| Q |
272 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttc |
356 |
Q |
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| T |
2213562 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttc |
2213646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 2200811 - 2200932
Alignment:
| Q |
172 |
tctgtcagtagtccttgttgaatataaagggcaataagttgt-----ttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttc |
266 |
Q |
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| T |
2200811 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttctggattgaaactctgtttcatcttttgaatgtctactttctacggtgttc |
2200910 |
T |
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| Q |
267 |
tgcttctattatttattgctct |
288 |
Q |
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| T |
2200911 |
tgcttctatgatttattgctct |
2200932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 2200661 - 2200739
Alignment:
| Q |
21 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
99 |
Q |
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| T |
2200661 |
tcctagaatatacttttaatgccctctctccttaatacaatacactcactctgtttgttgcggattatggtaatatttg |
2200739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 2213313 - 2213387
Alignment:
| Q |
21 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2213313 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactc----tgttgcagattatggtaatatttg |
2213387 |
T |
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