View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_28 (Length: 367)
Name: NF1602_low_28
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 170 - 363
Target Start/End: Complemental strand, 36996152 - 36995959
Alignment:
| Q |
170 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgaagcaatgatgatcaagt |
269 |
Q |
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| T |
36996152 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgatgcaatgatgatcaagt |
36996053 |
T |
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| Q |
270 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaac |
363 |
Q |
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| T |
36996052 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaac |
36995959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 36996309 - 36996209
Alignment:
| Q |
13 |
attattcttaggcatcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtgtctgtaacgatctttact |
112 |
Q |
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| T |
36996309 |
attattcttaggcatcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtgtctgtaacgatctttact |
36996210 |
T |
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| Q |
113 |
t |
113 |
Q |
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| T |
36996209 |
t |
36996209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 36990520 - 36990434
Alignment:
| Q |
248 |
tttgaagcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttat |
338 |
Q |
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| T |
36990520 |
tttgaagtaatgatgttcaagtaacaagttttccatc----atgtacaattgtacatactccccacaatgatatagattttcaattcttat |
36990434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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