View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_3 (Length: 606)
Name: NF1602_low_3
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 358 - 600
Target Start/End: Complemental strand, 50464227 - 50463985
Alignment:
| Q |
358 |
tttgagatttcttaaatctcttaccttgatggtaattatatattttataaaaataaattaaaaatatctaacannnnnnnnaggaagatatgagactgac |
457 |
Q |
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| T |
50464227 |
tttgagattacttaaatctcttaccttgatggtaattatatattttttaaaaataaattaaaaatatctaacattttttttaggaagatatgagactgac |
50464128 |
T |
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| Q |
458 |
acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct |
557 |
Q |
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| T |
50464127 |
acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct |
50464028 |
T |
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| Q |
558 |
accagaccccatttccttgtcatattcttttgcttcatctcac |
600 |
Q |
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| T |
50464027 |
accagaccccatttccttgtcatattcttttgcttcatatcac |
50463985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 50464640 - 50464299
Alignment:
| Q |
19 |
ttatttaccattgaaccgaactctagattatcaagatatcttttctttatgaatcagatggttaatattnnnnnnntgatctaattgataaggttttagc |
118 |
Q |
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| T |
50464640 |
ttatttaccattcaaccgaactctagattaccaaaatctcttttctttatgaatcatagggttaatactaaaaaagtgatctaattgataaggtttcagt |
50464541 |
T |
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| Q |
119 |
tgagaactcacaaaccacaaaaacttagatctagatctatttgctgatgtaaggtcatcgttaacgaataatatgtaagtatctacgtcaacactatata |
218 |
Q |
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| T |
50464540 |
tgagaactcacaaaccacaaaaacttagatccagatctatttactgatctaaggtcgtcgtgaacgaataatatgtaagtatctacgtcaacactatatg |
50464441 |
T |
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| Q |
219 |
aaccctgagattcggagccaaattggcatacctttttctttttataaaaaagatactcgatannnnnnnnnacaatcatgttatacatatgaaatattca |
318 |
Q |
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| T |
50464440 |
aaccctgaggttcggagccaaattgacatacctttttctttttata-aaaagatactcgata-ttttttttacaatcatattatacatatgaaatattta |
50464343 |
T |
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| Q |
319 |
acatcatttatcgttgttcaatctccgttgttaaatatatttga |
362 |
Q |
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| T |
50464342 |
acaccatttatcgttattcaatcttcgtcgttaaatatatttga |
50464299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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