View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_32 (Length: 344)

Name: NF1602_low_32
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_32
NF1602_low_32
[»] chr8 (4 HSPs)
chr8 (1-223)||(41375621-41375843)
chr8 (238-328)||(41375498-41375588)
chr8 (252-311)||(10621383-10621442)
chr8 (238-308)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (238-311)||(44662457-44662530)
chr7 (238-308)||(46195949-46196019)
chr7 (239-311)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (238-311)||(24202178-24202251)
chr2 (239-279)||(38790090-38790130)
chr2 (265-302)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (250-302)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (240-311)||(9489505-9489576)
chr3 (252-302)||(27394544-27394594)
chr3 (250-302)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (255-311)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41375843 - 41375621
Alignment:
Q  1 gttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggatgaaaactgcaatatctatttgacagacgaggacgagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41375843 gttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggattaaaactgcaatatctatttgacagacgaggacgagaa 41375744  T
Q  101 ctcgatgaagatgagtgaaaggaagggaaagactagtatctgatttcttgtgttaggggtttaaattnnnnnnnnnnnnnnnctaaatctaaactgttaa 200  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||               ||||||||||||||||||    
T  41375743 ctcgatgaagatgagtgaaaggaaggggaagactaggttctgatttcttgtgttaggggtttaaattaaaaaatgaaaaaaactaaatctaaactgttaa 41375644  T
Q  201 ttaaattcgacggctcatgttaa 223  Q
    |||||| ||||||||||||||||    
T  41375643 ttaaatccgacggctcatgttaa 41375621  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 328
Target Start/End: Complemental strand, 41375588 - 41375498
Alignment:
Q  238 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgcaaatgaactaagctcaca 328  Q
    |||||||||| | |||||||||||||||||| ||||||||   ||||||||| | ||||| |||||||||| ||| ||| |||||||||||    
T  41375588 tggagaaattcactttaaaggtgaaatagtgaggtgtccggagttcaaaccccaacccctacatacataatacaagtgagctaagctcaca 41375498  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 10621383 - 10621442
Alignment:
Q  252 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    |||||||||||| | ||||||||||| | |||||||||   |||||||||||||||||||    
T  10621383 ttaaaggtgaaaaaatggggtgtccggggttcaaaccctgacccctgcatacataatgca 10621442  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 30660054 - 30659984
Alignment:
Q  238 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 308  Q
    |||| |||||||  |||||||||||||||||||||||||| | ||  |||||   ||||||||||||||||    
T  30660054 tggaaaaatttaccttaaaggtgaaatagtggggtgtccggggtttgaaccccgacccctgcatacataat 30659984  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 44662457 - 44662530
Alignment:
Q  238 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  44662457 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 44662530  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 46196019 - 46195949
Alignment:
Q  238 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 308  Q
    |||||||||| |  |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||    
T  46196019 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgcatacataat 46195949  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 6548707 - 6548778
Alignment:
Q  239 ggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    ||||||||| |  ||||||||||||||||||||||||||   ||| |||||  | ||||||||||||||||||    
T  6548707 ggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccc-cggccctgcatacataatgca 6548778  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 24202251 - 24202178
Alignment:
Q  238 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  24202251 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 24202178  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 38790090 - 38790130
Alignment:
Q  239 ggagaaatttattttaaaggtgaaatagtggggtgtccgag 279  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  38790090 ggagaaattcatcttaaaggtgaaatagtggggtgtccgag 38790130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 40473543 - 40473580
Alignment:
Q  265 agtggggtgtccgagattcaaacccaagcccctgcata 302  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  40473543 agtggggtgtccgaggttcaaaccccagcccctgcata 40473580  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 7234054 - 7234002
Alignment:
Q  250 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 302  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  7234054 ttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcata 7234002  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 9489576 - 9489505
Alignment:
Q  240 gagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    |||||||| || |||||||||||||||| |||| |||  | ||| |||||  ||||||||||||||||||||    
T  9489576 gagaaattcatcttaaaggtgaaatagtagggtatccagggttcgaaccccggcccctgcatacataatgca 9489505  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 27394594 - 27394544
Alignment:
Q  252 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 302  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||    
T  27394594 ttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcata 27394544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 40160824 - 40160772
Alignment:
Q  250 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 302  Q
    |||||||||||||  ||||||||||||| | ||||||||| |||||| |||||    
T  40160824 ttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcata 40160772  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 32660914 - 32660858
Alignment:
Q  255 aaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 311  Q
    ||||||||| ||||||||||||| | ||  ||||| |||||||||||| ||||||||    
T  32660914 aaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcatatataatgca 32660858  T

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