View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_34 (Length: 336)
Name: NF1602_low_34
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 20460340 - 20460150
Alignment:
| Q |
122 |
aaatattgtattgccagtattattgtggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaactccaatctttctat |
221 |
Q |
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| T |
20460340 |
aaatattgtattgccagaattattgtgccaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacttcagtctttctat |
20460241 |
T |
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| Q |
222 |
atgatctagagaagcttggtttatctatgggattttctattagtatt---acaatctgtgagaaagggagggataaaataacatcctacat |
309 |
Q |
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| T |
20460240 |
atgatctagagaagtttggttgatgtatgggattttctattagtattaccacaatctgagagagagggagggataaaatcacatcctacat |
20460150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 20277321 - 20277171
Alignment:
| Q |
122 |
aaatattgtattgccagtattattgtggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaactccaatctttctat |
221 |
Q |
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| T |
20277321 |
aaatattgtattgccagaattattgcggcaactatgttgttttgtttattaattgtgatgtttggtcatcttgtcttttcaaaaacttcagtctttctat |
20277222 |
T |
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| Q |
222 |
atgatctagagaagcttggtttatctatgggattttctattagtattacaa |
272 |
Q |
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| T |
20277221 |
atgatctagagaagcttggttgatctatgagattttcctttagtattacaa |
20277171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 20474695 - 20474551
Alignment:
| Q |
11 |
ttattctacgatgaaatcaaattgtatgctctaactgcttgtgtgtgtggttatagtcagacacgttgactcgataatgactgcttgtgttttgtgtgct |
110 |
Q |
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| T |
20474695 |
ttattctaagatgaaaccaaattgtatgctcgaactgcttgtgtg----gatatagtaagacacattgactggataatgactgcttgtgttttgtgtgct |
20474600 |
T |
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| Q |
111 |
ttagcatatctaaatattgtattgccagtattattgtggcaactatgtt |
159 |
Q |
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| T |
20474599 |
ttagcatatccaaatattgtattgccagaattattttggcaactatgtt |
20474551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 20438131 - 20437976
Alignment:
| Q |
11 |
ttattctacgatgaaatcaaattgtatgctctaactgcttgtgtgtgtggttatagtcagacacgttgactcgataatgactgcttg---tgttttgtgt |
107 |
Q |
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| T |
20438131 |
ttattctacgatgaaatcaaattgtatgctcgaactgcttg----tgtggatatagtcagacacgttgactggataatgactgcttgatcagttgtacgt |
20438036 |
T |
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| Q |
108 |
gctttagcatat-------ctaaatattgtattgccagtattattgtggcaactatgttg |
160 |
Q |
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| T |
20438035 |
gctttagcatatccaaatccaaaatattgtattgccagaattattgtggcaattatgttg |
20437976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 20448971 - 20448881
Alignment:
| Q |
180 |
tgtttggtcatcttgtcttttcaaaaactccaatctttctatatgatctagagaagcttggtttatctatgggattttctattagtattac |
270 |
Q |
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| T |
20448971 |
tgtttggtcatcgtgtcttttcaaaaacttcagtctttctatatgatctagagaagtttgattgatgtatgagattttctatcagtattac |
20448881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 20449098 - 20449056
Alignment:
| Q |
11 |
ttattctacgatgaaatcaaattgtatgctctaactgcttgtg |
53 |
Q |
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| T |
20449098 |
ttattctacgatgaaatcaaattgtatgctcgaactgcttgtg |
20449056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 20277399 - 20277355
Alignment:
| Q |
11 |
ttattctacgatgaaatcaaattgtatgctctaactgcttgtgtg |
55 |
Q |
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| T |
20277399 |
ttattctatgatgaaatcaaattgtatgctcgaactgcttgtgtg |
20277355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 20460418 - 20460374
Alignment:
| Q |
11 |
ttattctacgatgaaatcaaattgtatgctctaactgcttgtgtg |
55 |
Q |
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| T |
20460418 |
ttattctacgatgaaatcagattgtatgctcgaactgcttgtgtg |
20460374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 20449035 - 20448990
Alignment:
| Q |
84 |
ataatgactgcttgtgttttgtgtgctttagcatatctaaatattg |
129 |
Q |
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| T |
20449035 |
ataatgaatgtttgtgttgtgtgtgctttagcatatctaaatattg |
20448990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 283466 - 283327
Alignment:
| Q |
17 |
tacgatgaaatcaaattgtatgctctaactgcttgtgtgtgtggttatagtcagacacgttgactcgataatgactgcttgtgttttgtgtgctttagca |
116 |
Q |
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| T |
283466 |
tacgatgaaatcaaattgtatgctctaacttcttgtgtggctatctatagtcacacacgttcactcgataatgactgcttgtgttgtgtgtgctttagca |
283367 |
T |
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| Q |
117 |
tatctaaatattgtattgccagtattattgtggcaactat |
156 |
Q |
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| T |
283366 |
tatctaaatattgtattgccagaattattgttgcaactat |
283327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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