View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_36 (Length: 315)

Name: NF1602_low_36
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_36
NF1602_low_36
[»] chr2 (1 HSPs)
chr2 (1-298)||(12799542-12799841)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 12799841 - 12799542
Alignment:
Q  1 attaagtggataatttcaccattaaaatatattaggttctataatttataaaagttgaatttttcgtttgagtccaactgacagtttatagggttaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| ||||||     
T  12799841 attaagtggataatttcaccattaaaatatattaggttctataatttataaaagttgaattttccgttcgagtccaactaacagtttgtaggattaatag 12799742  T
Q  101 ttgtggaaaatcgtctttgtctcgtacatgatactattcgacttgtgagattaatctttataattttgtatgggattatccaatttttt--aaaaaaggt 198  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||    
T  12799741 ttgtgggaaatcgtctttgtcttgtacatgatactattcgacttgtgagattaatctttataattgtgtatgagattatccaatttttttaaaaaaaggt 12799642  T
Q  199 ataaatatgtttgtaatcgattttattaaaagggaaatagttggatctctaaacatcattgtcggtgttttttcttgaaattctatgtgtgtccattctg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12799641 ataaatatgtttgtaatcgattttattaaaagggaaatagttggatctctaaacatcattgtcggtgttttttcttgaaattctatgtgtgtccattctg 12799542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University