View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_39 (Length: 304)

Name: NF1602_low_39
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_39
NF1602_low_39
[»] chr5 (4 HSPs)
chr5 (15-304)||(25923942-25924231)
chr5 (13-304)||(25905099-25905390)
chr5 (13-304)||(25883765-25884056)
chr5 (13-304)||(25961036-25961327)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 25924231 - 25923942
Alignment:
Q  15 tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25924231 tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta 25924132  T
Q  115 tttccgtcaaaaacaacaatcttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25924131 tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg 25924032  T
Q  215 tgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 304  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25924031 tgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 25923942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 25905390 - 25905099
Alignment:
Q  13 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25905390 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt 25905291  T
Q  113 tatttccgtcaaaaacaacaatcttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta 212  Q
     |||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  25905290 catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagtta 25905191  T
Q  213 ggtgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 304  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25905190 ggcgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaagcatcctgtgttgctgtt 25905099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 25884056 - 25883765
Alignment:
Q  13 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25884056 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt 25883957  T
Q  113 tatttccgtcaaaaacaacaatcttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta 212  Q
     ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  25883956 catttccgtcaaaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagtta 25883857  T
Q  213 ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 304  Q
    || ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25883856 gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 25883765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 25961036 - 25961327
Alignment:
Q  13 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25961036 catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt 25961135  T
Q  113 tatttccgtcaaaaacaacaatcttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta 212  Q
     |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||| ||| |||||||| |||||||||||||||| ||||||    
T  25961136 catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagtta 25961235  T
Q  213 ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 304  Q
    || ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25961236 gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcctgtgttgctgtt 25961327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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