View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_4 (Length: 596)

Name: NF1602_low_4
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_4
NF1602_low_4
[»] chr6 (19 HSPs)
chr6 (19-506)||(3137006-3137493)
chr6 (378-456)||(959492-959570)
chr6 (390-503)||(34168785-34168897)
chr6 (386-497)||(17249431-17249542)
chr6 (375-478)||(29338194-29338297)
chr6 (407-501)||(7749347-7749441)
chr6 (375-501)||(33220826-33220952)
chr6 (378-475)||(32115610-32115707)
chr6 (378-452)||(4206714-4206788)
chr6 (382-480)||(34304383-34304481)
chr6 (375-502)||(28009102-28009229)
chr6 (378-452)||(4166040-4166114)
chr6 (384-453)||(357840-357909)
chr6 (378-456)||(34554395-34554472)
chr6 (398-461)||(26225717-26225780)
chr6 (378-454)||(28625844-28625919)
chr6 (398-463)||(30514136-30514202)
chr6 (402-447)||(28543317-28543362)
chr6 (379-467)||(7200654-7200742)
[»] chr8 (31 HSPs)
chr8 (375-501)||(38815160-38815286)
chr8 (378-501)||(22589454-22589577)
chr8 (375-455)||(3187882-3187962)
chr8 (378-478)||(4699760-4699860)
chr8 (378-448)||(24124947-24125017)
chr8 (375-476)||(39434558-39434659)
chr8 (379-503)||(4073398-4073522)
chr8 (378-501)||(18804479-18804601)
chr8 (382-452)||(24451036-24451105)
chr8 (411-503)||(24320201-24320293)
chr8 (383-502)||(4066712-4066829)
chr8 (391-453)||(8882258-8882320)
chr8 (378-454)||(6618198-6618273)
chr8 (375-455)||(42659139-42659219)
chr8 (375-436)||(3821155-3821216)
chr8 (378-455)||(6592488-6592564)
chr8 (380-453)||(9259412-9259485)
chr8 (378-503)||(43823854-43823978)
chr8 (408-458)||(500151-500201)
chr8 (375-453)||(25021929-25022007)
chr8 (378-479)||(37514109-37514210)
chr8 (409-453)||(8227984-8228028)
chr8 (375-454)||(28196105-28196184)
chr8 (380-442)||(121841-121903)
chr8 (375-456)||(5329717-5329798)
chr8 (375-476)||(8540495-8540596)
chr8 (418-503)||(24350880-24350965)
chr8 (420-501)||(18596759-18596840)
chr8 (391-447)||(6792189-6792245)
chr8 (415-503)||(8619686-8619774)
chr8 (449-505)||(10442812-10442868)
[»] scaffold0009 (1 HSPs)
scaffold0009 (378-501)||(102972-103095)
[»] chr3 (39 HSPs)
chr3 (379-501)||(32546661-32546783)
chr3 (375-501)||(39583344-39583470)
chr3 (382-501)||(26772624-26772743)
chr3 (378-501)||(53785575-53785698)
chr3 (382-501)||(4763915-4764033)
chr3 (375-476)||(26856877-26856978)
chr3 (400-501)||(21552530-21552631)
chr3 (378-461)||(13582416-13582499)
chr3 (382-453)||(38671002-38671073)
chr3 (382-455)||(44198679-44198752)
chr3 (390-503)||(46940903-46941016)
chr3 (378-501)||(44699-44825)
chr3 (375-459)||(38145964-38146048)
chr3 (382-481)||(38978921-38979020)
chr3 (380-453)||(4472976-4473049)
chr3 (378-455)||(37133117-37133194)
chr3 (378-452)||(5338561-5338632)
chr3 (375-459)||(52412006-52412090)
chr3 (375-454)||(3443427-3443506)
chr3 (385-479)||(4669788-4669882)
chr3 (405-488)||(26276494-26276577)
chr3 (378-501)||(52741630-52741753)
chr3 (385-459)||(7257681-7257755)
chr3 (385-506)||(50446126-50446247)
chr3 (405-501)||(49017833-49017929)
chr3 (378-506)||(25094690-25094814)
chr3 (380-453)||(25324943-25325016)
chr3 (398-471)||(26393824-26393897)
chr3 (382-461)||(4537588-4537666)
chr3 (375-454)||(37992246-37992325)
chr3 (379-501)||(8592007-8592128)
chr3 (398-454)||(32691004-32691060)
chr3 (375-454)||(7502125-7502204)
chr3 (375-450)||(54508499-54508574)
chr3 (375-456)||(3643064-3643143)
chr3 (409-445)||(2601751-2601787)
chr3 (385-453)||(7900772-7900840)
chr3 (422-462)||(23535173-23535213)
chr3 (379-455)||(35484799-35484875)
[»] chr7 (40 HSPs)
chr7 (378-454)||(48539094-48539170)
chr7 (378-455)||(21326956-21327033)
chr7 (375-453)||(28517402-28517480)
chr7 (380-494)||(45613962-45614076)
chr7 (386-479)||(22197875-22197968)
chr7 (386-479)||(22239853-22239946)
chr7 (375-455)||(5825185-5825265)
chr7 (388-454)||(27027758-27027824)
chr7 (378-455)||(982861-982938)
chr7 (378-455)||(19277203-19277282)
chr7 (378-454)||(24527502-24527578)
chr7 (378-453)||(27521385-27521460)
chr7 (382-501)||(45003019-45003138)
chr7 (379-501)||(5972335-5972457)
chr7 (375-501)||(40726595-40726721)
chr7 (380-501)||(4501125-4501246)
chr7 (380-453)||(41117890-41117963)
chr7 (375-455)||(23037457-23037537)
chr7 (378-501)||(25187049-25187172)
chr7 (380-479)||(32584488-32584587)
chr7 (375-453)||(43856788-43856866)
chr7 (378-483)||(43333948-43334053)
chr7 (381-501)||(10904984-10905104)
chr7 (378-454)||(30216176-30216252)
chr7 (379-453)||(34772696-34772770)
chr7 (380-454)||(42295304-42295378)
chr7 (380-453)||(38839240-38839313)
chr7 (378-453)||(5714954-5715029)
chr7 (401-455)||(2904292-2904346)
chr7 (391-461)||(29054755-29054825)
chr7 (390-459)||(9281266-9281335)
chr7 (390-459)||(9292237-9292306)
chr7 (392-455)||(45974731-45974794)
chr7 (378-454)||(36558985-36559061)
chr7 (433-501)||(38766190-38766258)
chr7 (380-454)||(7637630-7637705)
chr7 (375-417)||(38766259-38766301)
chr7 (413-479)||(41370539-41370605)
chr7 (438-503)||(12137230-12137295)
chr7 (383-427)||(6635086-6635130)
[»] chr1 (31 HSPs)
chr1 (379-501)||(24177630-24177752)
chr1 (378-501)||(21472869-21472992)
chr1 (390-503)||(30688421-30688534)
chr1 (378-501)||(868521-868642)
chr1 (378-501)||(22346761-22346884)
chr1 (375-453)||(34644480-34644558)
chr1 (396-501)||(5453961-5454066)
chr1 (378-501)||(31737441-31737563)
chr1 (375-482)||(2764364-2764471)
chr1 (388-477)||(21934267-21934357)
chr1 (380-461)||(2898608-2898689)
chr1 (380-477)||(45659766-45659863)
chr1 (379-501)||(7213109-7213238)
chr1 (404-454)||(45835330-45835380)
chr1 (378-455)||(28041245-28041322)
chr1 (415-455)||(1114023-1114063)
chr1 (406-501)||(28493477-28493572)
chr1 (405-503)||(50161569-50161667)
chr1 (398-455)||(4611101-4611158)
chr1 (412-461)||(7483790-7483839)
chr1 (418-475)||(16323961-16324018)
chr1 (378-455)||(20259915-20259992)
chr1 (382-455)||(47459594-47459667)
chr1 (398-501)||(48841220-48841323)
chr1 (375-441)||(4862104-4862170)
chr1 (410-503)||(10348566-10348659)
chr1 (420-501)||(19035345-19035426)
chr1 (375-431)||(38731545-38731601)
chr1 (419-506)||(33147372-33147459)
chr1 (378-452)||(11128372-11128446)
chr1 (398-455)||(29170322-29170379)
[»] chr5 (25 HSPs)
chr5 (378-478)||(2566213-2566313)
chr5 (378-501)||(32269915-32270037)
chr5 (383-501)||(35310314-35310432)
chr5 (375-500)||(37873753-37873879)
chr5 (375-455)||(430514-430594)
chr5 (378-458)||(15292143-15292223)
chr5 (378-501)||(23023461-23023584)
chr5 (420-506)||(11005739-11005825)
chr5 (375-455)||(25663147-25663227)
chr5 (378-454)||(42921611-42921686)
chr5 (378-453)||(22188773-22188848)
chr5 (386-488)||(15506741-15506843)
chr5 (375-503)||(13167025-13167153)
chr5 (380-504)||(24113438-24113562)
chr5 (378-444)||(15809972-15810038)
chr5 (386-455)||(27336607-27336676)
chr5 (378-455)||(38875553-38875627)
chr5 (403-456)||(34475952-34476005)
chr5 (385-454)||(14423600-14423667)
chr5 (415-452)||(12033346-12033383)
chr5 (398-454)||(26212721-26212777)
chr5 (382-501)||(33692176-33692293)
chr5 (378-453)||(16017087-16017162)
chr5 (398-476)||(27294329-27294407)
chr5 (38-66)||(29075637-29075665)
[»] chr4 (43 HSPs)
chr4 (382-501)||(39001263-39001382)
chr4 (375-501)||(3329862-3329988)
chr4 (375-498)||(4419133-4419255)
chr4 (375-501)||(50001041-50001167)
chr4 (375-477)||(53619476-53619578)
chr4 (378-454)||(16955373-16955449)
chr4 (375-461)||(26521395-26521480)
chr4 (398-503)||(50442617-50442722)
chr4 (378-501)||(30940850-30940973)
chr4 (379-453)||(34107815-34107889)
chr4 (375-452)||(18981654-18981729)
chr4 (378-455)||(25504207-25504284)
chr4 (380-504)||(42455727-42455851)
chr4 (375-477)||(23233229-23233331)
chr4 (375-449)||(23255631-23255705)
chr4 (399-501)||(31846969-31847071)
chr4 (408-497)||(2852305-2852394)
chr4 (379-452)||(38535688-38535760)
chr4 (375-488)||(50464411-50464524)
chr4 (382-454)||(48657037-48657109)
chr4 (378-467)||(53170412-53170502)
chr4 (378-453)||(600810-600885)
chr4 (378-504)||(32312829-32312960)
chr4 (398-453)||(55933598-55933653)
chr4 (375-453)||(34213534-34213611)
chr4 (375-445)||(56462221-56462291)
chr4 (383-476)||(7536694-7536787)
chr4 (375-503)||(8738069-8738197)
chr4 (397-501)||(23604956-23605060)
chr4 (375-454)||(23242813-23242892)
chr4 (375-454)||(45661604-45661683)
chr4 (391-447)||(40005289-40005345)
chr4 (429-501)||(40392723-40392795)
chr4 (378-459)||(49354184-49354269)
chr4 (416-460)||(50351146-50351190)
chr4 (392-475)||(9601102-9601184)
chr4 (419-454)||(50463102-50463137)
chr4 (375-454)||(54190966-54191045)
chr4 (375-501)||(132251-132377)
chr4 (419-501)||(12053333-12053415)
chr4 (382-427)||(28739845-28739890)
chr4 (386-454)||(22449812-22449879)
chr4 (405-461)||(47585153-47585209)
[»] scaffold0148 (1 HSPs)
scaffold0148 (378-501)||(33116-33239)
[»] chr2 (32 HSPs)
chr2 (378-501)||(4413184-4413307)
chr2 (378-501)||(41868026-41868148)
chr2 (378-456)||(13413262-13413340)
chr2 (378-501)||(17344504-17344627)
chr2 (378-479)||(9685533-9685634)
chr2 (380-455)||(18745074-18745149)
chr2 (426-503)||(30602353-30602430)
chr2 (375-455)||(27502274-27502354)
chr2 (422-501)||(3208406-3208485)
chr2 (378-454)||(19161901-19161977)
chr2 (375-455)||(27494223-27494303)
chr2 (375-435)||(44686348-44686408)
chr2 (399-453)||(15515286-15515340)
chr2 (398-455)||(28224912-28224969)
chr2 (380-454)||(3825639-3825713)
chr2 (404-454)||(11921348-11921398)
chr2 (380-453)||(23485056-23485129)
chr2 (378-442)||(20142872-20142935)
chr2 (430-501)||(41702138-41702209)
chr2 (375-477)||(7760960-7761062)
chr2 (375-461)||(44684973-44685059)
chr2 (382-475)||(17663467-17663560)
chr2 (382-475)||(17714491-17714584)
chr2 (385-426)||(33612670-33612711)
chr2 (375-455)||(1296192-1296272)
chr2 (403-454)||(10296669-10296720)
chr2 (429-492)||(18892375-18892438)
chr2 (375-450)||(24765178-24765253)
chr2 (38-66)||(7863397-7863425)
chr2 (434-494)||(20143119-20143179)
chr2 (405-453)||(26407839-26407887)
chr2 (421-453)||(42122731-42122763)
[»] scaffold1768 (1 HSPs)
scaffold1768 (379-501)||(303-425)
[»] scaffold0470 (1 HSPs)
scaffold0470 (378-454)||(7516-7591)
[»] scaffold0490 (1 HSPs)
scaffold0490 (378-422)||(6279-6323)
[»] scaffold0406 (1 HSPs)
scaffold0406 (418-501)||(6754-6837)
[»] scaffold0244 (1 HSPs)
scaffold0244 (413-494)||(16807-16888)
[»] scaffold0031 (1 HSPs)
scaffold0031 (375-476)||(49306-49407)
[»] scaffold0361 (1 HSPs)
scaffold0361 (378-451)||(17397-17468)
[»] scaffold0309 (1 HSPs)
scaffold0309 (415-501)||(5190-5276)
[»] scaffold0110 (1 HSPs)
scaffold0110 (375-501)||(47635-47761)
[»] scaffold0514 (1 HSPs)
scaffold0514 (391-447)||(4378-4434)


Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 3137006 - 3137493
Alignment:
Q  19 ccttctacaatagagaaatctctattcactaaactttacaaatattcagttgatacccttactacttccgaaatgttcctattgataaaactacttaact 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3137006 ccttctacaatagagaaatctctattccctaaactttacaaatattcagttgatacccttactacttccgaaatgttcctattgataaaactacttaact 3137105  T
Q  119 aattctccctattctatatcctaacagtcaataatagatttgtaataaggtcgaccctttcctgaagccctctatgatcatagccctaaagtctatagta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3137106 aattctccctattctatatcctaacagtcaataatagatttgtaataaggtcgaccctttcctgaagccctctatgatcatagccctaaattctatagta 3137205  T
Q  219 ataggttgcctcttctatcttatacttcccttctgtgtataattcctttttccggtgtgctttaacaatcgnnnnnnnntcatagaaccagccgcccaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||    
T  3137206 ataggttgcctcttctatcttatacttcccttctgtgtataattcctttttccagtgtgctttaacaatcgaaaaaaaatcatagaaccagccgcccaag 3137305  T
Q  319 tcaaggaagttaataaaaccatatcaatgaaggcacatgatgnnnnnnnctttctgaagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatg 418  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3137306 tcaaggaagttaataaaaccatatcaatgaaggcacatgatttttttttctttctgaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatg 3137405  T
Q  419 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3137406 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgccttccattcatgtgtaattttc 3137493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 959570 - 959492
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  959570 ggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaaggc 959492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 34168897 - 34168785
Alignment:
Q  390 caatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttcc 489  Q
    ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| | ||||||||| ||||| || |||||     
T  34168897 caatgtcatgactcctagatccatgaatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttct 34168799  T
Q  490 attcatgtgtaatt 503  Q
    ||||||||||||||    
T  34168798 attcatgtgtaatt 34168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 386 - 497
Target Start/End: Original strand, 17249431 - 17249542
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttcc 485  Q
    ||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||  |||| | ||| ||||||||||| || ||    
T  17249431 atagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 17249530  T
Q  486 ttccattcatgt 497  Q
    | | ||||||||    
T  17249531 tcctattcatgt 17249542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 478
Target Start/End: Original strand, 29338194 - 29338297
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||| |||| | |||||||| ||| |||||||||| ||||||    
T  29338194 aagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaatggcctagcagtgcagcttgtt 29338293  T
Q  475 gccc 478  Q
    ||||    
T  29338294 gccc 29338297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 407 - 501
Target Start/End: Complemental strand, 7749441 - 7749347
Alignment:
Q  407 ggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||||||| || ||| | ||||||||||||    
T  7749441 ggtccatgaatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaa 7749347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 33220826 - 33220952
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||  |||||||||||||||| ||||||  |||| | ||| ||||||    
T  33220826 aagggttatgcatagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttgtt 33220925  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    | ||| || ||| | ||||||||||||    
T  33220926 ggccgcttgcctcctattcatgtgtaa 33220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 32115707 - 32115610
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 475  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||  |||| ||| |||||||||    
T  32115707 ggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaaggtctagcggtggaacttgttg 32115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 4206714 - 4206788
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    ||||||||||  ||||||| |||| |||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  4206714 ggtcatgcatgacaatgtcatgtcacctaggtcaatgaatatagtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 480
Target Start/End: Complemental strand, 34304481 - 34304383
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgt 480  Q
    |||||||||||| || |||||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||  |||| |  ||| |||||||||||    
T  34304481 atgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaaggtatagcggcacaaattgttgcccgt 34304383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 502
Target Start/End: Original strand, 28009102 - 28009229
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    ||||||||| || | ||||||| || |||||||||||||||| ||||| ||||| || |||| |||||| |||||||||||| || |   ||| ||| ||    
T  28009102 aagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttaccagaattgattttgcaatccaaaaaggcctaacgacgcagcttatt 28009201  T
Q  475 gcccgttttccttccattcatgtgtaat 502  Q
    | |||||| ||||| |||||||||||||    
T  28009202 gtccgtttgccttctattcatgtgtaat 28009229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 4166040 - 4166114
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    ||||||||||  ||||||| |||| |||||||| || ||| | ||||||||||||||||||||||||||||||||    
T  4166040 ggtcatgcatgacaatgtcatgtcacctaggtcaataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 357840 - 357909
Alignment:
Q  384 gcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||| ||||  |||||||||| |||||    
T  357840 gcatagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaa 357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 456
Target Start/End: Original strand, 34554395 - 34554472
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    ||||||| |||||||| || |||||| || ||| |||||| |||||||||||||||||| ||||| |||||||||||||    
T  34554395 ggtcatgtatagcaatatcatgtctcgtaagtc-atgaattttgtgtttacgaggattgattttgtcatccaaaaaggc 34554472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 26225717 - 26225780
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||| ||||||| ||| || ||||||||| |||||||||||||| ||||||||||| ||||||    
T  26225717 tgtcttctaggtcgatggattttgtgtttatgaggattggttttgtcatccaaaaagacttagc 26225780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 28625919 - 28625844
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||| || |||| | |||| |||||| ||||||||||||||||||  ||||| ||||||||| |||||||    
T  28625919 ggtcatgcataaca-tgtcatatctcataggtctatgaatgttgtgtttacggagattgattttgccattcaaaaag 28625844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 30514136 - 30514202
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattgg-ttttgccatccaaaaaggcttagcag 463  Q
    |||||||||||||||| |||||| ||||||| | |||||| |||||||||  |||||| ||||||||    
T  30514136 tgtctcctaggtccatcaatgttctgtttacaaagattggtttttgccatttaaaaagacttagcag 30514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 28543362 - 28543317
Alignment:
Q  402 tcctaggtccatgaatgttgtgtttacgaggattggttttgccatc 447  Q
    |||||||||||| ||| || |||||| |||||||||||||||||||    
T  28543362 tcctaggtccataaatattatgtttaagaggattggttttgccatc 28543317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 7200654 - 7200742
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgca 467  Q
    ||||||||||||||  |  |||||||||| || ||||||||||| ||||| ||||||   ||||| || ||||||||||| || |||||    
T  7200654 gtcatgcatagcaacattatgtctcctagatcaatgaatgttgtatttacaaggattatctttgcaattcaaaaaggcttggcggtgca 7200742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 375 - 501
Target Start/End: Complemental strand, 38815286 - 38815160
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||    
T  38815286 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgtt 38815187  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    ||||| || ||||| ||||||||||||    
T  38815186 gcccgcttgccttctattcatgtgtaa 38815160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 22589454 - 22589577
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||  |||| | ||| |||||||||    
T  22589454 ggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcc 22589553  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||  ||||| ||||||    
T  22589554 cgcttgccttttattcaagtgtaa 22589577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 3187962 - 3187882
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3187962 aagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaagg 3187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 4699860 - 4699760
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||| |||||||| |  |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  | ||| |||||||||    
T  4699860 ggtcatgaatagcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgcagcttgttgcc 4699761  T
Q  478 c 478  Q
    |    
T  4699760 c 4699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 24125017 - 24124947
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatcc 448  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  24125017 ggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatcc 24124947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 375 - 476
Target Start/End: Complemental strand, 39434659 - 39434558
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||  |||| | ||| ||||||    
T  39434659 aagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgtt 39434560  T
Q  475 gc 476  Q
    ||    
T  39434559 gc 39434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 379 - 503
Target Start/End: Complemental strand, 4073522 - 4073398
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    |||||||||||||||||| ||| ||| || ||| ||||||||||||||||||| |||| ||||  |||||||||| |||||||    ||||||||| |||    
T  4073522 gtcatgcatagcaatgtcatgtttccaagatccgtgaatgttgtgtttacgagaattgattttatcatccaaaaaagcttagcgacacaacttgtttccc 4073423  T
Q  479 gttttccttccattcatgtgtaatt 503  Q
    | || ||||||| ||||||||||||    
T  4073422 gcttgccttccaatcatgtgtaatt 4073398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 18804601 - 18804479
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||| || ||||||||| || || |||| ||||||||||||||||||||||||||||||||||  |||| | ||| |||||||||    
T  18804601 ggtcatgcataacaatgtcatgactcctaggttca-gagtgttttgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcc 18804503  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
     | || ||||| ||||| ||||||    
T  18804502 tgcttgccttctattcaagtgtaa 18804479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 24451105 - 24451036
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgatt-gttttgccatccaaaa 24451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 411 - 503
Target Start/End: Complemental strand, 24320293 - 24320201
Alignment:
Q  411 catgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    |||||||||||||||||||||||||| |||||  |||||||||||  |||||||||| ||||||||| ||||  |||| |||| |||||||||    
T  24320293 catgaatgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcctgtttgtcttctattcgtgtgtaatt 24320201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 502
Target Start/End: Complemental strand, 4066829 - 4066712
Alignment:
Q  383 tgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttt 482  Q
    |||||||||||||  ||| |||||||||||||| ||||||||| |||| |||||||||| ||||||||||| ||||||    ||||||||||| |||  |    
T  4066829 tgcatagcaatgtaatgtgtcctaggtccatgactgttgtgttcacgatgattggttttaccatccaaaaa-gcttagtgacgcaacttgttgtccg-ct 4066732  T
Q  483 tccttccattcatgtgtaat 502  Q
    |||||||| |||||||||||    
T  4066731 tccttccaatcatgtgtaat 4066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 453
Target Start/End: Complemental strand, 8882320 - 8882258
Alignment:
Q  391 aatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  8882320 aatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaa 8882258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 6618273 - 6618198
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||  |||||| |||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  6618273 ggtcatgcatat-aatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 6618198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 42659219 - 42659139
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| |||||||||||| |  ||||| |||||| |||||||||||||||||||||||||  ||||| ||||||||||||    
T  42659219 aagggttatgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaagg 42659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 3821216 - 3821155
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattg 436  Q
    |||||| ||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  3821216 aagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgaggattg 3821155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 6592564 - 6592488
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||  |||||| |||||| ||||| ||||||||||||||||||||| |||||||||| |||||| |||||    
T  6592564 ggtcatgcatat-aatgtcatgtctcataggttcatgaatgttgtgtttacgagtattggttttgtcatccagaaagg 6592488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 9259412 - 9259485
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||||||| | | ||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||    
T  9259412 tcatgcatagcaatgtcatatatcctaagtccatgaatgttgtatttacgaagattgattttgtcatccaaaaa 9259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 503
Target Start/End: Complemental strand, 43823978 - 43823854
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| ||||||| || ||||| |||||||||||||||   ||||| |||| |||| |||||||| |||  | ||||||| |||||    
T  43823978 ggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgtttacggcaattgggtttgtcatctaaaaaggcctagttgcgcaactttttgcc 43823879  T
Q  478 cgttttccttccattcatgtgtaatt 503  Q
    |  || ||||| ||| ||||||||||    
T  43823878 ctcttgccttctatt-atgtgtaatt 43823854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 500201 - 500151
Alignment:
Q  408 gtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctt 458  Q
    ||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  500201 gtccatgaatgttgtgtttacgaggattgattttaccattcaaaaaggctt 500151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 25021929 - 25022007
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||| | ||||||| | ||||||||||||| ||||||||||||||| | ||||| ||||  ||||||||||    
T  25021929 aagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgattttatcatccaaaaa 25022007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 37514210 - 37514109
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||   ||||| |||||||||||||||||| || |||||||||| | |||||| |||||||||  || | | ||| |||||||||    
T  37514210 ggtcatgcatatcaatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgccacccaaaaaggtctaacggcgcagcttgttgcc 37514111  T
Q  478 cg 479  Q
    ||    
T  37514110 cg 37514109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 8227984 - 8228028
Alignment:
Q  409 tccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  8227984 tccatgaatgttgtgtttacgaggaatggttttgctatccaaaaa 8228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 28196184 - 28196105
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||| ||||||| | ||||||| |||||||||| |||| | |||||||||||||| | |||| ||||| |||||||||||    
T  28196184 aaggatcatgcacaacaatgtcatgtctcctagatccacggatgttgtgtttacgggaattgattttgtcatccaaaaag 28196105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 121841 - 121903
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttg 442  Q
    ||||||||| ||||||| ||||  ||| ||||||| ||||||||||||||||||||| |||||    
T  121841 tcatgcatatcaatgtcatgtcatctaagtccatggatgttgtgtttacgaggattgattttg 121903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 5329717 - 5329798
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    |||||||||| | | |||| || ||||||||| ||| || ||||||||||||| |||||||  ||||| |||||||||||||    
T  5329717 aagggtcatggacaacaatatcatgtctcctatgtctatcaatgttgtgtttatgaggattaattttgacatccaaaaaggc 5329798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 8540495 - 8540596
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    ||||||||||| || ||||||| ||| | |||  | ||| |||||||||||||||| ||||| ||||  ||||||||||| | ||||||  |||||||||    
T  8540495 aagggtcatgcttaacaatgtcatgttttctattttcataaatgttgtgtttacgatgattgattttatcatccaaaaagacgtagcagcacaacttgtt 8540594  T
Q  475 gc 476  Q
    ||    
T  8540595 gc 8540596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 503
Target Start/End: Original strand, 24350880 - 24350965
Alignment:
Q  418 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    ||||||||||||||||||||||||||| |||||||| || |||  |  || | ||||||||| ||  |||| ||||||||||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaatt 24350965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 18596759 - 18596840
Alignment:
Q  420 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||| |||||||||||||||||||||| ||||||  |||| | ||| ||||||| | | || ||||| ||||| ||||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaa 18596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 6792245 - 6792189
Alignment:
Q  391 aatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatc 447  Q
    |||||| |||||| || |||||| ||||||||||||||||  |||||||||| ||||    
T  6792245 aatgtcatgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatc 6792189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 503
Target Start/End: Complemental strand, 8619774 - 8619686
Alignment:
Q  415 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    |||||||||||||||| ||||| ||||||| | ||||||||| || || |||| ||| ||| ||| ||  |||  ||||||||||||||    
T  8619774 aatgttgtgtttacgacgattgattttgcctttcaaaaaggcctaacaatgcagcttattgtccgcttaacttttattcatgtgtaatt 8619686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 10442868 - 10442812
Alignment:
Q  449 aaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatttt 505  Q
    |||||| |||| | |||||  ||||||||||||| |||||||||||| |||||||||    
T  10442868 aaaaagacttatcggtgcagtttgttgcccgtttaccttccattcatatgtaatttt 10442812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 103095 - 102972
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||    
T  103095 ggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcc 102996  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  102995 cgcttgccttctattcaagtgtaa 102972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 379 - 501
Target Start/End: Complemental strand, 32546783 - 32546661
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||| | ||| ||||||||||    
T  32546783 gtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgccc 32546684  T
Q  479 gttttccttccattcatgtgtaa 501  Q
    | || ||||| ||||| ||||||    
T  32546683 gcttgccttctattcaagtgtaa 32546661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 39583344 - 39583470
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| | ||||||||||    
T  39583344 aagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgtt 39583443  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    | | | || | ||| ||||||||||||    
T  39583444 gtctgcttgctttctattcatgtgtaa 39583470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 382 - 501
Target Start/End: Complemental strand, 26772743 - 26772624
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| | ||| ||||||||||| |    
T  26772743 atgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgct 26772644  T
Q  482 ttccttccattcatgtgtaa 501  Q
    | ||| | ||||||||||||    
T  26772643 tgcctcctattcatgtgtaa 26772624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 53785698 - 53785575
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||   ||| | | | |||||||||    
T  53785698 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcc 53785599  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  53785598 cgcttgccttctattcaagtgtaa 53785575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 382 - 501
Target Start/End: Original strand, 4763915 - 4764033
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||||| |  | ||||||||||||||| |    
T  4763915 atgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggattagaattgccatccaaaaaggcttggtggcgcaacttgttgcccgct 4764013  T
Q  482 ttccttccattcatgtgtaa 501  Q
    | ||||| ||||| ||||||    
T  4764014 tgccttctattcaagtgtaa 4764033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 26856877 - 26856978
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||| || |||||||||||||| |||||||||||||| |||| | ||| ||||||    
T  26856877 aagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagcttgtt 26856976  T
Q  475 gc 476  Q
    ||    
T  26856977 gc 26856978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 501
Target Start/End: Complemental strand, 21552631 - 21552530
Alignment:
Q  400 tctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgt 499  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||  | | |||||||||||||||||| ||||| ||||| ||||    
T  21552631 tctcctaggtccatgaatgttgtgtttacaagaattggttttgacatccaaaaagacttgacggcgcaacttgttgcccgtttaccttctattcaagtgt 21552532  T
Q  500 aa 501  Q
    ||    
T  21552531 aa 21552530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 461
Target Start/End: Complemental strand, 13582499 - 13582416
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  13582499 ggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggcctagc 13582416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 38671002 - 38671073
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  38671002 atgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaa 38671073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 44198752 - 44198679
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||    
T  44198752 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaagg 44198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 46940903 - 46941016
Alignment:
Q  390 caatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttcc 489  Q
    ||||||| || ||| ||||| ||||||||||||||||||||  |||| |||||  |||||||||| | |||| ||||||||||||||| |||| |||||     
T  46940903 caatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgcctgtttaccttct 46941002  T
Q  490 attcatgtgtaatt 503  Q
    ||||||||||||||    
T  46941003 attcatgtgtaatt 46941016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 44825 - 44699
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatg---ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    ||||||||||||||||||| ||| |||||||||||||||||   ||||||| || |||||| |||||||||||||||||||  |||| | |||  |||||    
T  44825 ggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgcagtttgtt 44726  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    ||||| || ||||| ||||| ||||||    
T  44725 gcccgcttgccttctattcaagtgtaa 44699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 459
Target Start/End: Complemental strand, 38146048 - 38145964
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||| |||| |||||| ||||    
T  38146048 aagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaagactta 38145964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 382 - 481
Target Start/End: Original strand, 38978921 - 38979020
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||| ||||||| |||||| |||||  || ||||||||||||||||  ||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  38978921 atgcataacaatgtcatgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaaggcttaacaacgcaacttgttgcccgtt 38979020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 4473049 - 4472976
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||||| || ||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||    
T  4473049 tcatgcatagcaatttcatgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatccaaaaa 4472976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 37133117 - 37133194
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||||||| ||||||||| ||  ||||||||||||||||  |||||||||||||| |||||||||||    
T  37133117 ggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaagg 37133194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 5338632 - 5338561
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    |||||||| |||||||||| |||||| ||||||   |||||||||||||||||||||||||||||||||||||||    
T  5338632 ggtcatgcgtagcaatgtcttgtctcataggtc---gaatgttgtgtttacgaggattggttttgccatccaaaa 5338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 459
Target Start/End: Original strand, 52412006 - 52412090
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    |||||||||||||| ||||||| ||||||||||  |||| ||| |||||||||| | ||||| ||||||||||||||||||||||    
T  52412006 aagggtcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaaggctta 52412090  T

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Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 3443427 - 3443506
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||| ||| |||||| |||||||||  || ||||||||||||||||||| |||||||||||||||||| ||||    
T  3443427 aagggtcatgcgtaggaatgtcttgtctcctaaatctatgaatgttgtgtttacgatgattggttttgccatccacaaag 3443506  T

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Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 479
Target Start/End: Original strand, 4669788 - 4669882
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||| ||||| |||||  ||||||||||| || || | ||| |||||||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccg 4669882  T

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Target: chr3; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 26276577 - 26276494
Alignment:
Q  405 taggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttc 488  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||   |||| ||| | ||||||||||| || |||||    
T  26276577 taggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgccttc 26276494  T

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Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 52741630 - 52741753
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| |||||||||| |||||  || |||| || |||| |||| |||||||||||||||||||  ||||   ||||||| |||||    
T  52741630 ggtcatgcatagcaatgtcatgtctcctagatccatttatcttgtattcacgaagatttgttttgccatccaaaaaggtctagcgacgcaacttattgcc 52741729  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || |  ||||| ||||| ||||||    
T  52741730 cgctcgccttctattcaagtgtaa 52741753  T

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Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 459
Target Start/End: Original strand, 7257681 - 7257755
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    ||||||||| || ||| | ||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||    
T  7257681 catagcaatatcatgtattctaggtccatgaatgttgtgtttacgaagattagttttgtcattcaaaaaggctta 7257755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 50446247 - 50446126
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttc 484  Q
    ||||| ||||| || ||||||||||| ||| |||| || ||||  ||||||||||||| |||||||||||| ||||||| |||  |||||||||| ||      
T  50446247 catagtaatgttgtatctcctaggtctatggatgtagtttttagaaggattggttttgtcatccaaaaaggattagcagcgcaggttgttgcccgcttat 50446148  T
Q  485 cttccattcatgtgtaattttc 506  Q
    ||| ||||| | ||||||||||    
T  50446147 ctttcattcctatgtaattttc 50446126  T

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Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 405 - 501
Target Start/End: Complemental strand, 49017929 - 49017833
Alignment:
Q  405 taggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||  |  || ||||| ||||||| ||| || ||||| ||||| ||||||    
T  49017929 taggtcaatgaatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagcttgttgtccgcttgccttctattcaagtgtaa 49017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 25094690 - 25094814
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||  | |||  || |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||| |     | ||||||| |    
T  25094690 ggtcatgcatagcaatgtaatatcttttaagtccatgaatgttgtgttcacgaagattagttttgcaatctaaaaaggcttaac----gatcttgttgtc 25094785  T
Q  478 cgttttccttccattcatgtgtaattttc 506  Q
     | || |||||||||||||||||||||||    
T  25094786 tgcttaccttccattcatgtgtaattttc 25094814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 25325016 - 25324943
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||||||||  || |||||  ||||||||| ||||| |||||| ||||| ||||||||||||||||    
T  25325016 tcatgcatagcaatgtcaagtttcctaaatccatgaatattgtgcttacgatgattgcttttgccatccaaaaa 25324943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 26393824 - 26393897
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaactt 471  Q
    |||||||| |||| ||||||||||||||||||||||||| | || |||||||| |||| ||||| || ||||||    
T  26393824 tgtctccttggtctatgaatgttgtgtttacgaggattgatatttccatccaacaaggtttagcggtacaactt 26393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 4537666 - 4537588
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    |||||||||||||| |||| | ||||||| ||||||||||| |||| ||||||||||||  ||||| ||||||| |||||    
T  4537666 atgcatagcaatgttgtgttttctaggtctatgaatgttgt-tttaagaggattggtttcaccatctaaaaaggtttagc 4537588  T

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Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 37992325 - 37992246
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||| || |||||| || ||| || || |||||||||||||||| ||| ||||||||||  |||||||||||    
T  37992325 aagggtcatgcacagtaatgtcatgactcgtacgtgcatgaatgttgtgttttcgaagattggttttatcatccaaaaag 37992246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 501
Target Start/End: Complemental strand, 8592128 - 8592007
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    |||||||||| |||||||  | || |||||||||| ||| ||||||||| | |||||| |||||||||||||||||||  ||| | ||| |||||| |||    
T  8592128 gtcatgcatatcaatgtcacgccttctaggtccatcaatattgtgttta-gcggattgattttgccatccaaaaaggcccagcggcgcagcttgttaccc 8592030  T
Q  479 gttttccttccattcatgtgtaa 501  Q
      || ||||  ||||||||||||    
T  8592029 acttgccttatattcatgtgtaa 8592007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 32691004 - 32691060
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||| ||| |||||||||||||||| |||||||| ||||  |||||||||||    
T  32691004 tgtctcctaagtctatgaatgttgtgtttaagaggattgattttatcatccaaaaag 32691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 7502125 - 7502204
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||| | ||||||| || ||| ||| ||||||||| || |||||||||  |||| |||||| ||||||||||    
T  7502125 aagggtcatgcacaacaatgtcatgactcatagatccatgaatattatgtttacgataattgattttgctatccaaaaag 7502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 54508499 - 54508574
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaa 450  Q
    |||| |||||| || |||| || | ||| |||||||||||||||||||||||| ||  |||||||||| |||||||    
T  54508499 aaggatcatgcgtaacaatatcatatctgctaggtccatgaatgttgtgtttaagataattggttttgtcatccaa 54508574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 456
Target Start/End: Complemental strand, 3643143 - 3643064
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    |||| ||||||||| ||||||| ||| |  ||||||||||||||||||||||  || ||||| ||||| ||||| |||||||    
T  3643143 aaggatcatgcataacaatgtcatgttttttaggtccatgaatgttgtgttt--gatgattgattttgtcatccgaaaaggc 3643064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 2601787 - 2601751
Alignment:
Q  409 tccatgaatgttgtgtttacgaggattggttttgcca 445  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  2601787 tccatgaacgttgtgtttacgaggattgattttgcca 2601751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 7900840 - 7900772
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||  ||| |||||||||||| ||| || ||||||| | |||| ||||| |||||||||||    
T  7900840 catagcaatgttatgtttcctaggtccatcaatattttgtttacaatgattagttttaccatccaaaaa 7900772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 23535213 - 23535173
Alignment:
Q  422 tgtttacgaggattggttttgccatccaaaaaggcttagca 462  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  23535213 tgtttacgaggattgattttgccatccagaaagggttagca 23535173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 35484799 - 35484875
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||| |||||||  |||| ||||||  ||||||||||||| ||| |||| |  ||||||||||||||||||    
T  35484799 gtcatgtataacaatgtcaagtcttctaggtatatgaatgttgtgtctacaaggaataattttgccatccaaaaagg 35484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 48539170 - 48539094
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48539170 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 21326956 - 21327033
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  21326956 ggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaagg 21327033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 28517402 - 28517480
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||| ||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28517402 aagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 28517480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 380 - 494
Target Start/End: Original strand, 45613962 - 45614076
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| | ||| ||||||| |||    
T  45613962 tcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccg 45614061  T
Q  480 ttttccttccattca 494  Q
     || ||||| |||||    
T  45614062 cttgccttctattca 45614076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 386 - 479
Target Start/End: Complemental strand, 22197968 - 22197875
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||  |||| ||||| ||||||||||||||| || |||||||||||||||||    
T  22197968 atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccg 22197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 22239853 - 22239946
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||  |||| ||||| ||||||||||||||| || |||||||||||||||||    
T  22239853 atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccg 22239946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 5825265 - 5825185
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  5825265 aagggttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaagg 5825185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 27027758 - 27027824
Alignment:
Q  388 agcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  27027758 agcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaag 27027824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 982938 - 982861
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||| ||||||| ||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  982938 ggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaagg 982861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 19277282 - 19277203
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtt--tacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||   ||||  |||||||||||||||||||||||    
T  19277282 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaagg 19277203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 24527578 - 24527502
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||||| | |||||| |||||||||||||||| || |||||||||||||||| |||||||||||    
T  24527578 ggtcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaag 24527502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 27521460 - 27521385
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||    
T  27521460 ggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 382 - 501
Target Start/End: Original strand, 45003019 - 45003138
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||||||||||  |||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||  |||| | ||| ||| ||| ||| |    
T  45003019 atgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgct 45003118  T
Q  482 ttccttccattcatgtgtaa 501  Q
    | ||| | ||||||||||||    
T  45003119 tgcctcctattcatgtgtaa 45003138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 501
Target Start/End: Original strand, 5972335 - 5972457
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    ||||||||||| |||||| | ||||| || || |||||||||||||||||||||||| |||||||||||||||||| | || |  |||||||| || |||    
T  5972335 gtcatgcatagtaatgtcatttctcccagatctatgaatgttgtgtttacgaggattagttttgccatccaaaaagacctaacgatgcaacttatttccc 5972434  T
Q  479 gttttccttccattcatgtgtaa 501  Q
    || | ||||| ||||| ||||||    
T  5972435 gtatgccttctattcaagtgtaa 5972457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 40726595 - 40726721
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||| |||||   |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |  || ||  ||| ||||||    
T  40726595 aagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttgtt 40726694  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    ||||| || ||| | ||||||||||||    
T  40726695 gcccgcttgcctcctattcatgtgtaa 40726721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 501
Target Start/End: Complemental strand, 4501246 - 4501125
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| | |||| |||| |||||||  |||||| ||| ||| ||| |||    
T  4501246 tcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcgcatcttattgtccg 4501147  T
Q  480 ttttccttccattcatgtgtaa 501  Q
     || ||||  ||||| ||||||    
T  4501146 cttgccttatattcaagtgtaa 4501125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 41117890 - 41117963
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  41117890 tcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaa 41117963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 23037537 - 23037457
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||||||||||||||| | |||| |||||| |||||| |||||||||||||||||| |||||||||| |||||||    
T  23037537 aagggttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 25187049 - 25187172
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||  | | ||||| |||| ||||| ||||||   |||| | ||| |||||||||    
T  25187049 ggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttaccatctaaaaagatctagcggcgcagcttgttgcc 25187148  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  25187149 cgcttgccttctattcaagtgtaa 25187172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 380 - 479
Target Start/End: Complemental strand, 32584587 - 32584488
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||||| ||||||  |||||| ||| || ||||||||||||||||| | ||||| |||| |||||||||||||| |||||| ||||||||| |||||    
T  32584587 tcatgcatatcaatgttatgtctcatagatcgatgaatgttgtgtttacaaagattgattttaccatccaaaaaggcctagcagcgcaacttgtcgcccg 32584488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 43856866 - 43856788
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||| | ||||||| || |||||||||||||||||||| |||||||||| |||| |||||| |||||||||    
T  43856866 aagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 378 - 483
Target Start/End: Original strand, 43333948 - 43334053
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||| | |||||||||| || |||||||||| ||||| || ||||||||||||||| ||||||| ||| || | ||| |||||||||    
T  43333948 ggtcatgcatatcaatgacatgtctcctagatctatgaatgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgcagcttgttgcc 43334047  T
Q  478 cgtttt 483  Q
    | ||||    
T  43334048 cctttt 43334053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 501
Target Start/End: Complemental strand, 10905104 - 10904984
Alignment:
Q  381 catgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgt 480  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| | |  |||||||||||| | ||| || ||| |||||| |||      
T  10905104 catgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggattgatctgaccatccaaaaagacctagtagcgcagcttgttaccctc 10905005  T
Q  481 tttccttccattcatgtgtaa 501  Q
    || | ||| ||||||||||||    
T  10905004 ttgcattctattcatgtgtaa 10904984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 30216176 - 30216252
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||| | ||||| ||| |||||||    
T  30216176 ggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacgaggatcgattttgtcattcaaaaag 30216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 34772770 - 34772696
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||| ||||||| ||| | |||||||||||||| ||||||||||||  |||||||||||||| ||||||    
T  34772770 gtcatgcatatcaatgtcatgttttctaggtccatgaatattgtgtttacgataattggttttgccattcaaaaa 34772696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 42295304 - 42295378
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||| || |||| |||||||||||||||||||| |||||||||||| |||| ||||||  ||||||||||    
T  42295304 tcatgcataacattgtcatgtctcctaggtccatgaatcttgtgtttacgatgattagttttgttatccaaaaag 42295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 38839313 - 38839240
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||| ||||||| ||| |   ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  38839313 tcatgcataacaatgtcatgtttatcaggtccatgaatgttgtgtttacgaagattggttttaccatccaaaaa 38839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 5715029 - 5714954
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||| |||| ||||||  |||||||||||||||| ||||||||||||| || ||||||||||| |||| |||||    
T  5715029 ggtcatacataacaatgttatgtctcctaggtccataaatgttgtgtttatgaagattggttttgtcatctaaaaa 5714954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 2904346 - 2904292
Alignment:
Q  401 ctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||| |||||||||||||||||||  ||||||||||| |||||||||||    
T  2904346 ctcctaggtctatgaatgttgtgtttacgataattggttttgctatccaaaaagg 2904292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 29054825 - 29054755
Alignment:
Q  391 aatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||| || ||||||||||| |||||||| || |||| ||||||||||||||||||||| ||||| |||||    
T  29054825 aatgttgtatctcctaggtctatgaatgtagtttttaagaggattggttttgccatccataaaggattagc 29054755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 9281266 - 9281335
Alignment:
Q  390 caatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    ||||||| || ||| || |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  9281266 caatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaaggctta 9281335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 9292237 - 9292306
Alignment:
Q  390 caatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    ||||||| || ||| || |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  9292237 caatgtcatgactcttaagtccattaatgttgtgtttaggagaattggttttgcaatccaaaaaggctta 9292306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 45974731 - 45974794
Alignment:
Q  392 atgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||| |||||||||||| |||||||||||||||||| |||||   ||||| ||||||||||||    
T  45974731 atgtcatgtctcctaggttcatgaatgttgtgtttacaaggataaattttgtcatccaaaaagg 45974794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 36558985 - 36559061
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||  ||| || |||||  |||||||||||||||||||||||||| || || |||||| ||| ||||||    
T  36558985 ggtcatgcatataaatatcatgtcttataggtccatgaatgttgtgtttacgatgaatgattttgctatctaaaaag 36559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 501
Target Start/End: Complemental strand, 38766258 - 38766190
Alignment:
Q  433 attggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||||||||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||||||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaa 38766190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 7637630 - 7637705
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgttt-acgaggattggttttgccatccaaaaag 454  Q
    ||||||||| |||||| |||||| ||||||| |||||||| || ||| | |||||||| ||||||||||| |||||    
T  7637630 tcatgcataacaatgttgtgtcttctaggtctatgaatgtagtttttcaagaggattgattttgccatcctaaaag 7637705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 38766301 - 38766259
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaat 417  Q
    |||||| ||||||||||||||  ||||||||||||||||||||    
T  38766301 aagggttatgcatagcaatgttatgtctcctaggtccatgaat 38766259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 41370539 - 41370605
Alignment:
Q  413 tgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    |||||||||| ||||| | ||||||||||| |||| |||||||| |||| | ||||| |||||||||    
T  41370539 tgaatgttgtttttacaatgattggttttggcatctaaaaaggcctagcggcgcaacctgttgcccg 41370605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 503
Target Start/End: Original strand, 12137230 - 12137295
Alignment:
Q  438 ttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    |||||||||| | ||||| ||||| | ||||||||||||||| || |||| | |||||||||||||    
T  12137230 ttttgccatcaagaaagggttagcggcgcaacttgttgcccgcttgcctttcgttcatgtgtaatt 12137295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 6635086 - 6635130
Alignment:
Q  383 tgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgttta 427  Q
    |||||| ||||||| |||||||||| ||||| |||||||||||||    
T  6635086 tgcataacaatgtcatgtctcctagatccataaatgttgtgttta 6635130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 379 - 501
Target Start/End: Original strand, 24177630 - 24177752
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||  |||| ||||| ||||||||||    
T  24177630 gtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagcttgttgccc 24177729  T
Q  479 gttttccttccattcatgtgtaa 501  Q
    | ||  |||| ||||| ||||||    
T  24177730 gcttgtcttctattcaagtgtaa 24177752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 21472992 - 21472869
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||  |||| | ||||||| |||||    
T  21472992 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaacttattgcc 21472893  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || | ||| ||||| ||||||    
T  21472892 cgcttgcattctattcaagtgtaa 21472869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 30688534 - 30688421
Alignment:
Q  390 caatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttcc 489  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |||| | ||| ||||||||||| || || ||     
T  30688534 caatgtcatgactcctgggtccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatct 30688435  T
Q  490 attcatgtgtaatt 503  Q
    ||||||||||||||    
T  30688434 attcatgtgtaatt 30688421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 868521 - 868642
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| ||||||||| ||||||||||  |||||| || ||||||||||||||||||||||||||  |||| | ||| |||||||||    
T  868521 ggtcatgcatagcaatgtcatgtctcctaagtccatgaat--tgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcc 868618  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  868619 cgcttgccttctattcaagtgtaa 868642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 22346884 - 22346761
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||  |||| | ||| ||||||| |    
T  22346884 ggtcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtc 22346785  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  22346784 cgcttgccttctattcaagtgtaa 22346761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 34644558 - 34644480
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34644558 aagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaa 34644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 396 - 501
Target Start/End: Complemental strand, 5454066 - 5453961
Alignment:
Q  396 cgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcat 495  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||| | ||| ||||||||||| || ||| | ||||||    
T  5454066 cgtgtttcttaggtccatgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcat 5453967  T
Q  496 gtgtaa 501  Q
    ||||||    
T  5453966 gtgtaa 5453961  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 31737441 - 31737563
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||  ||| |||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||| || | ||| ||||||| |    
T  31737441 ggtcatgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtc 31737539  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
     |||| ||||| ||||| ||||||    
T  31737540 tgtttgccttctattcaagtgtaa 31737563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 482
Target Start/End: Complemental strand, 2764471 - 2764364
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||| | ||||||  |||||| ||||||||| |||||||||||||||| ||||| |||| ||||||||||||| ||||| | ||| ||||||    
T  2764471 aagggttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagcggcgcagcttgtt 2764372  T
Q  475 gcccgttt 482  Q
     |||||||    
T  2764371 acccgttt 2764364  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 477
Target Start/End: Complemental strand, 21934357 - 21934267
Alignment:
Q  388 agcaatgtcgtgtctcctaggtccatgaatgtt-gtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||  |||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  21934357 agcaatgttttgtctcctagttccatgaatgtttgtatttaagaggattggttttgccatccaaaaagggttagcggcgcagcttgttgcc 21934267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 2898689 - 2898608
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||||||| |||| || |||||| || |  ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  2898689 tcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggcttagc 2898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 45659766 - 45659863
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||| ||||||||||||| || ||||| |||||||||||||  ||||||| || |||||||||  |||| | |||| ||||||||    
T  45659766 tcatgcatagcaatgtcatgtctcctaggtcaataaatgtcgtgtttacgaggaccggttttgtcacccaaaaaggtctagctgcgcaaattgttgcc 45659863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 501
Target Start/End: Complemental strand, 7213238 - 7213109
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgag-------gattggttttgccatccaaaaaggcttagcagtgcaactt 471  Q
    ||||||||||  |||||| ||||| |||||||||||||||||||||| ||||        |||||||||| |||||||||||||  |||| | |||||||    
T  7213238 gtcatgcataataatgtcatgtcttctaggtccatgaatgttgtgttcacgaatcacgatgattggttttaccatccaaaaaggtctagcggcgcaactt 7213139  T
Q  472 gttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||| || ||||| ||||| ||||||    
T  7213138 gttgcccgcttgccttctattcaagtgtaa 7213109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 45835330 - 45835380
Alignment:
Q  404 ctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  45835330 ctaggtctatgaatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 28041245 - 28041322
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||||||| ||||  ||| |||||||||||||||| | | |||||||| |||| |||||||||||||    
T  28041245 ggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaagg 28041322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 1114023 - 1114063
Alignment:
Q  415 aatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaagg 1114063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 501
Target Start/End: Original strand, 28493477 - 28493572
Alignment:
Q  406 aggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||  |||| | |||  |||||| ||||||  |||| ||||| ||||||    
T  28493477 aggtccatgaatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaa 28493572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 503
Target Start/End: Original strand, 50161569 - 50161667
Alignment:
Q  405 taggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    ||||||||||||||||||||||| ||||||||  ||||| ||| |||| |||||||| |  || |||||||||| ||| ||||| ||| || |||||||    
T  50161569 taggtccatgaatgttgtgtttaagaggattgaatttgctatctaaaacggcttagcggcacagcttgttgcccttttgccttctatttatttgtaatt 50161667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 4611158 - 4611101
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||    
T  4611158 tgtctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaagg 4611101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 7483839 - 7483790
Alignment:
Q  412 atgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  7483839 atgaatgttgtgtttacgaagattagttttgccatctaaaaaggcttagc 7483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 16323961 - 16324018
Alignment:
Q  418 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 475  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||||| |||||||    
T  16323961 gttgtgtttacgaggattggtttaaccatccaaaaaggcctagtagtgcagcttgttg 16324018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 20259915 - 20259992
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||| |||||| |||||| || ||  || |||||||||||||   |||||||||||||||||||||||||    
T  20259915 ggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttatatggattggttttgccatccaaaaagg 20259992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 47459667 - 47459594
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||  ||||||||| ||| || ||||||||||||||||| |||| ||| ||||| ||||||||    
T  47459667 atgcatagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaagg 47459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 501
Target Start/End: Original strand, 48841220 - 48841323
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgt 497  Q
    |||||||||  || |||||| || ||||||||||||||| |||||| ||||||||| |  |||||| ||||||||||| ||| || |||   ||||||||    
T  48841220 tgtctcctaaatctatgaatattatgtttacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtccgcttacctcatattcatgt 48841319  T
Q  498 gtaa 501  Q
    ||||    
T  48841320 gtaa 48841323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 4862104 - 4862170
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggtttt 441  Q
    |||||||||||||| |||||||  ||| | ||| ||||||||||||||| |||||||||||| ||||    
T  4862104 aagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttt 4862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 503
Target Start/End: Original strand, 10348566 - 10348659
Alignment:
Q  410 ccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    |||||||||||||||||| | | ||||||| || ||| ||||||| | |||||| | || |||||||||  ||  |||||||||||||||||||    
T  10348566 ccatgaatgttgtgtttaagggtattggttgtgtcattcaaaaagacatagcagcgtaatttgttgcccacttgtcttccattcatgtgtaatt 10348659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 420 - 501
Target Start/End: Complemental strand, 19035426 - 19035345
Alignment:
Q  420 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||| |||||||||||||||| ||||||||||||  |||| | ||| ||||||| ||| || ||||| ||||| ||||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaa 19035345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 38731601 - 38731545
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgag 431  Q
    |||||||||||| |  |||||| || ||||||||||||||||| |||||||||||||    
T  38731601 aagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacgag 38731545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 506
Target Start/End: Complemental strand, 33147459 - 33147372
Alignment:
Q  419 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 506  Q
    ||||||||| || ||||||||||   ||||||||||| ||||| ||||||| | ||| | | || |||||||||| ||||||||||||    
T  33147459 ttgtgtttaagatgattggttttataatccaaaaagggttagcggtgcaacatattgtctgcttaccttccattcctgtgtaattttc 33147372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 11128372 - 11128446
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    ||||||||||| ||||||  ||||||||||||| || |||| ||||||||| | |||| ||||| | ||||||||    
T  11128372 ggtcatgcatatcaatgttatgtctcctaggtctataaatgatgtgtttacaatgatttgtttttctatccaaaa 11128446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 29170322 - 29170379
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||||||||||||||| |||||| |  ||| ||||||||||  |||||||    
T  29170322 tgtctcctaggtccatgaatgttgcgtttacaacaatttgttttgccatttaaaaagg 29170379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 2566213 - 2566313
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||  |||| | |||||||||||||    
T  2566213 ggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgcc 2566312  T
Q  478 c 478  Q
    |    
T  2566313 c 2566313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 32269915 - 32270037
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||| | ||| |||||| ||    
T  32269915 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagc-gggcagcttgttacc 32270013  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  32270014 cgcttgccttctattcaagtgtaa 32270037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 501
Target Start/End: Complemental strand, 35310432 - 35310314
Alignment:
Q  383 tgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttt 482  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |   ||| ||||||||||| ||    
T  35310432 tgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgctt 35310333  T
Q  483 tccttccattcatgtgtaa 501  Q
     ||| | ||||||||||||    
T  35310332 gcctcctattcatgtgtaa 35310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 500
Target Start/End: Original strand, 37873753 - 37873879
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||| | ||||||| || || ||||||| |||||||||||||||| |||||||| |||||| ||| |||||||| |||| ||||||||||||    
T  37873753 aagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggcctagcggtgcaacttgtt 37873852  T
Q  475 gcccgttt-tccttccattcatgtgta 500  Q
     ||||||| || ||| |||||||||||    
T  37873853 acccgtttgtctttctattcatgtgta 37873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 430594 - 430514
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| |||||||| |||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  430594 aagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaagg 430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 15292143 - 15292223
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctt 458  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  15292143 ggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagctt 15292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 23023584 - 23023461
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||| |||  | ||| ||| ||| |    
T  23023584 ggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgcatcttattgtc 23023485  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    ||||| ||||  ||| ||||||||    
T  23023484 cgtttgccttttatttatgtgtaa 23023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 420 - 506
Target Start/End: Complemental strand, 11005825 - 11005739
Alignment:
Q  420 tgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaattttc 506  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| || ||||||| | | |||||||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttccacttacgtgtaattttc 11005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 25663147 - 25663227
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||||||| ||||||  |||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  25663147 aagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaagg 25663227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 42921686 - 42921611
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||| ||||||| ||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||    
T  42921686 ggtcatgcataacaatgtcatgtctcctaagtccat-aatattgtgtttacaaggattggttttgccatccaaaaag 42921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 22188773 - 22188848
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||| |||| || |||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||    
T  22188773 ggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaattggttttgtcatccaaaaa 22188848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 15506741 - 15506843
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttcc 485  Q
    ||||||||||| ||||||||||  | | ||||||||||||||||||||||| |||| ||||| |||||||| || | | |||||||||||| ||||| ||    
T  15506741 atagcaatgtcatgtctcctagacctacgaatgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcgcaacttgttgctcgtttgcc 15506840  T
Q  486 ttc 488  Q
    |||    
T  15506841 ttc 15506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 503
Target Start/End: Original strand, 13167025 - 13167153
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| |||||||||||||   |||||||||||||||||||||||| |||||||| ||||| || ||  ||||||||||   |||| | ||| ||||||    
T  13167025 aagggttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgttatccaaaaagatctagcggcgcagcttgtt 13167124  T
Q  475 gcccgttttccttccattcatgtgtaatt 503  Q
    ||||  || ||| | ||||||||||||||    
T  13167125 gcccacttgcctcctattcatgtgtaatt 13167153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 504
Target Start/End: Complemental strand, 24113562 - 24113438
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||| || ||||  |||  ||| |||||||| ||||  |  ||||||||||| ||    
T  24113562 tcatgcataacaatgtcatgtcttctaggtccatgaatgttgtttttacaagaattgactttatcattcaaaaaggtttagtggcacaacttgttgctcg 24113463  T
Q  480 ttttccttccattcatgtgtaattt 504  Q
    ||| ||||| |||||| ||||||||    
T  24113462 tttgccttctattcatatgtaattt 24113438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 15810038 - 15809972
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgcc 444  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| ||||| |||||||||| |||||||    
T  15810038 ggtcatgtatagcaatgtcatgtctcctaggcccatgaatgtcgtgttcacgaggattgattttgcc 15809972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 27336676 - 27336607
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||  ||||||||| ||||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  27336676 atagcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaagg 27336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 38875627 - 38875553
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||||  |||| |||||||||||    
T  38875627 ggtcatgcataacaatgtcttgtctcctaggtcaatg-atgttgtgtttacgatgattgg--ttgcgatccaaaaagg 38875553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 34476005 - 34475952
Alignment:
Q  403 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  34476005 cctaggtccatgaatgttgtgtttacgaagattgttttttccgtccaaaaaggc 34475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 14423667 - 14423600
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||| ||||||| |||||| ||||||||| |||  |||||| || |||||||||||||||||||||||||    
T  14423667 cataacaatgtcatgtctcttaggtccataaat--tgtgttcacaaggattggttttgccatccaaaaag 14423600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 452
Target Start/End: Complemental strand, 12033383 - 12033346
Alignment:
Q  415 aatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12033383 aatgttgtgtttacgatgattggttttgccatccaaaa 12033346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 26212721 - 26212777
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||| ||||||||||||||| || | |||||||||||||||| ||| |||||    
T  26212721 tgtctcctaagtccatgaatgttgttttcatgaggattggttttgccttccgaaaag 26212777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 501
Target Start/End: Original strand, 33692176 - 33692293
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||| ||||||  |||||| ||||| |||||||||| |||||||||   |||||||| ||||||||||||   |||| | ||| ||||||||| | |    
T  33692176 atgcataacaatgttatgtctcataggttcatgaatgttctgtttacgat--ttggtttttccatccaaaaagatctagcggcgcagcttgttgcctgct 33692273  T
Q  482 ttccttccattcatgtgtaa 501  Q
    | ||| | ||||||||||||    
T  33692274 tgcctcctattcatgtgtaa 33692293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 16017162 - 16017087
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||||||||| |||||||||||||  |||  ||| || |||| || ||||| |||||||||| |||||    
T  16017162 ggtcatgcatagcaatgttgtgtctcctaggtttatgggtgtggtttttaagatgattgattttgccatctaaaaa 16017087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 476
Target Start/End: Complemental strand, 27294407 - 27294329
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 476  Q
    ||||| |||||||||||||||   |||||| ||| | |  |||||||||| ||||||| ||||| ||||||||||||||    
T  27294407 tgtcttctaggtccatgaatgagttgtttatgagaactaattttgccatctaaaaaggtttagcggtgcaacttgttgc 27294329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 29075665 - 29075637
Alignment:
Q  38 ctctattcactaaactttacaaatattca 66  Q
    |||||||||||||||||||||||||||||    
T  29075665 ctctattcactaaactttacaaatattca 29075637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 382 - 501
Target Start/End: Complemental strand, 39001382 - 39001263
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtt 481  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| | |||  |||||||||| |    
T  39001382 atgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgct 39001283  T
Q  482 ttccttccattcatgtgtaa 501  Q
    | ||| | ||||||||||||    
T  39001282 tgcctcctattcatgtgtaa 39001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 375 - 501
Target Start/End: Complemental strand, 3329988 - 3329862
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||| | ||| ||||||    
T  3329988 aagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttgtt 3329889  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    ||||| || ||| | ||||| ||||||    
T  3329888 gcccgcttgcctcctattcacgtgtaa 3329862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 498
Target Start/End: Complemental strand, 4419255 - 4419133
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||| | ||| ||||||    
T  4419255 aagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaaatc-tagcggcgcagcttgtt 4419157  T
Q  475 gcccgttttccttccattcatgtg 498  Q
    ||||| || ||| | |||||||||    
T  4419156 gcccgcttgcctcctattcatgtg 4419133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 50001041 - 50001167
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||||||||||  |||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||   |||| | ||| ||||||    
T  50001041 aagggttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgtt 50001140  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    ||||| || ||| | ||||||||||||    
T  50001141 gcccgcttgcctcctattcatgtgtaa 50001167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 53619578 - 53619476
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||| ||||||| ||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| | ||| ||||||    
T  53619578 aagggttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgtt 53619479  T
Q  475 gcc 477  Q
    |||    
T  53619478 gcc 53619476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 16955449 - 16955373
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  16955449 ggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgatttggccatcaaaaaag 16955373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 26521480 - 26521395
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    ||||||||||| |||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||    
T  26521480 aagggtcatgcgtagcaatgtcatgtatcctaggcccatga-tgttgtgtttacgaggattggttttgtcatccaaaaaggtttagc 26521395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 50442617 - 50442722
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgt 497  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||  | ||| ||||||||||| ||  ||||||||| | |    
T  50442617 tgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtcttccattccttt 50442716  T
Q  498 gtaatt 503  Q
    ||||||    
T  50442717 gtaatt 50442722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 30940850 - 30940973
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||| | | ||||||||| |||||||||||||| | |||||||| ||||||||||||||||||  ||||   ||| |||||||||    
T  30940850 ggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcc 30940949  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || ||||| ||||| ||||||    
T  30940950 cgcttgccttctattcaagtgtaa 30940973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 34107815 - 34107889
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||| ||||||  |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  34107815 gtcatgcataacaatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaa 34107889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 18981654 - 18981729
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  18981654 aagggtcatgcatagtaatgtcatgtctc-taggtccatgaatgttgtgtttacgatgattgg-tttgccatccaaaa 18981729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 25504284 - 25504207
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||||||||| |||||| |||||| ||||||||||||| ||||||||| |||||||| ||||||||| ||||||||    
T  25504284 ggtcatgcatagtaatgtcatgtctcataggtccatgaatattgtgtttatgaggattgcttttgccattcaaaaagg 25504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 504
Target Start/End: Original strand, 42455727 - 42455851
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccg 479  Q
    ||||| ||| ||||||| ||| | ||||||||||||||||||| |||||||| ||||  |||| ||| |||||||| |||||||  ||||||||||| ||    
T  42455727 tcatggataacaatgtcatgttttctaggtccatgaatgttgtttttacgagaattgactttgtcattcaaaaaggtttagcagcacaacttgttgctcg 42455826  T
Q  480 ttttccttccattcatgtgtaattt 504  Q
     || ||||| |||||| ||||||||    
T  42455827 cttgccttctattcatatgtaattt 42455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 23233229 - 23233331
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    ||||||||||||||  |||||| ||| |||||| | |||||||||||| |||| |||||||| ||| || |||||||||||||||||||  || ||||||    
T  23233229 aagggtcatgcataataatgtcatgtttcctagattcatgaatgttgtctttatgaggattgatttggctatccaaaaaggcttagcagcacagcttgtt 23233328  T
Q  475 gcc 477  Q
    |||    
T  23233329 gcc 23233331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 449
Target Start/End: Complemental strand, 23255705 - 23255631
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatcca 449  Q
    |||||| ||||||| ||||||  ||||||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  23255705 aagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatcca 23255631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 31847071 - 31846969
Alignment:
Q  399 gtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtg 498  Q
    |||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||  |||| | |||  |||||||||| || ||| | |||||||||    
T  31847071 gtctcctaggtccatgaatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtg 31846972  T
Q  499 taa 501  Q
    |||    
T  31846971 taa 31846969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 408 - 497
Target Start/End: Complemental strand, 2852394 - 2852305
Alignment:
Q  408 gtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgt 497  Q
    |||||||||||||||||| || ||||||||||||  ||| |||||||||||||| | ||| ||||||||| | || ||||||||||||||    
T  2852394 gtccatgaatgttgtgttcacaaggattggttttttcattcaaaaaggcttagcggcgcagcttgttgcctgattaccttccattcatgt 2852305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 38535688 - 38535760
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaa 452  Q
    |||||||||||||||||| |||||  |||||||||| |||||||||||||||||||| |||||| |||||||||    
T  38535688 gtcatgcatagcaatgtcatgtcttataggtccatggatgttgtgtttacgaggattagttttg-catccaaaa 38535760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 375 - 488
Target Start/End: Original strand, 50464411 - 50464524
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||||||||| ||||||| ||||||| |  |  ||||||||||||||||||||||||  ||||||||||||||||| | |||| | ||| ||||||    
T  50464411 aagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgtt 50464510  T
Q  475 gcccgttttccttc 488  Q
    | ||| || |||||    
T  50464511 gtccgcttgccttc 50464524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 454
Target Start/End: Original strand, 48657037 - 48657109
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||  |||||| |||||| ||||||||||||||||||| ||||| ||||||| |||||||||    
T  48657037 atgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaag 48657109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 53170502 - 53170412
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctccta--ggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgca 467  Q
    ||||||||||||||||||| |||||||||  |||| |||||||||||||| |||||||||| |||||| ||| |||||||  ||||||||||    
T  53170502 ggtcatgcatagcaatgtcatgtctcctataggtc-atgaatgttgtgttcacgaggattgattttgctatctaaaaaggtctagcagtgca 53170412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 600810 - 600885
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||| ||| | ||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||    
T  600810 ggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaa 600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 378 - 504
Target Start/End: Original strand, 32312829 - 32312960
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgttt-----acgaggattggttttgccatccaaaaaggcttagcagtgcaacttg 472  Q
    ||||||||||| |||||| |||||| |||| || ||||||||||||||      | ||||||||||||||||||  ||||||  ||||| | | | ||||    
T  32312829 ggtcatgcataacaatgtagtgtcttctagatctatgaatgttgtgttgttttcaggaggattggttttgccatttaaaaagaattagcggcgtatcttg 32312928  T
Q  473 ttgcccgttttccttccattcatgtgtaattt 504  Q
    |||||||||| |||||||| ||||||||||||    
T  32312929 ttgcccgtttgccttccatccatgtgtaattt 32312960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 398 - 453
Target Start/End: Original strand, 55933598 - 55933653
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  55933598 tgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaa 55933653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 34213611 - 34213534
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||| || |||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||    
T  34213611 aagggtcatgcctaacaatgt-gtctctcctagttccatgaatgttgtgtttacaaggatcggttttgccatccgaaaa 34213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 445
Target Start/End: Original strand, 56462221 - 56462291
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgcca 445  Q
    |||| ||||||||  ||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  56462221 aaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggttttgcca 56462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 7536694 - 7536787
Alignment:
Q  383 tgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 476  Q
    ||||||||||| |  |||||| ||| |||||||||||| ||||||| | |||||||||||  ||||||||||   |||||||||||||||||||    
T  7536694 tgcatagcaattttatgtctcgtagatccatgaatgttatgtttacaatgattggttttgtgatccaaaaagatctagcagtgcaacttgttgc 7536787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 503
Target Start/End: Complemental strand, 8738197 - 8738069
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||| |||||||||  |||||| |||||| ||||| |||||||||||||| ||| | ||||| ||||| |||||||||| | ||||| | |||  |||||    
T  8738197 aaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgtgtatacaaagattgattttgtcatccaaaaaagtttagcggcgcagtttgtt 8738098  T
Q  475 gcccgttttccttccattcatgtgtaatt 503  Q
      ||| || |||| |||||||||||||||    
T  8738097 atccgcttacctttcattcatgtgtaatt 8738069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 23605060 - 23604956
Alignment:
Q  397 gtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatg 496  Q
    ||||||||||| ||||||||| |||||||   |||||||| ||||| ||||||||||||  |||| | ||||||||||| ||| ||  |||| |||||||    
T  23605060 gtgtctcctagatccatgaatattgtgttgttgaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatg 23604961  T
Q  497 tgtaa 501  Q
    |||||    
T  23604960 tgtaa 23604956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 23242892 - 23242813
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||||| ||||||| | |||| ||||||||| ||| |||||||||||| ||||| |||||  ||||||||||    
T  23242892 aagggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgattttgttatccaaaaag 23242813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 45661683 - 45661604
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||| || | ||||||| |  ||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  45661683 aagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggattggttttactatccaaaaag 45661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 40005289 - 40005345
Alignment:
Q  391 aatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatc 447  Q
    |||||| |||||||||| |  || |||||||||||||| ||||||||||||||||||    
T  40005289 aatgtcatgtctcctagatatatcaatgttgtgtttacaaggattggttttgccatc 40005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 40392723 - 40392795
Alignment:
Q  429 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||||||||||||||||||||||  |||| | ||| ||||||| ||| || ||||| ||||| ||||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaa 40392795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 49354184 - 49354269
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaat----gttgtgtttacgaggattggttttgccatccaaaaaggctta 459  Q
    |||||| |||||||||||  |||||||||  |||||||||    ||||||||||||| ||||| ||||| | ||||||||||||||    
T  49354184 ggtcattcatagcaatgtaatgtctcctaaatccatgaattaatgttgtgtttacgatgattgattttgtcgtccaaaaaggctta 49354269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 50351146 - 50351190
Alignment:
Q  416 atgttgtgtttacgaggattggttttgccatccaaaaaggcttag 460  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||    
T  50351146 atgttgtgtttaagtggattggttttgccatccaaaaaggattag 50351190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 475
Target Start/End: Complemental strand, 9601184 - 9601102
Alignment:
Q  392 atgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 475  Q
    ||||| || ||||||||| ||| | || ||||||||||||||||| ||||| |||||||||| ||||| | | |||||||||||    
T  9601184 atgtcatgactcctaggttcataagtggtgtgtttacgaggattgattttgtcatccaaaaa-gcttaacggcgcaacttgttg 9601102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Original strand, 50463102 - 50463137
Alignment:
Q  419 ttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||| ||||||||||||||||||    
T  50463102 ttgtgtttacgaggatttgttttgccatccaaaaag 50463137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 54190966 - 54191045
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||| |||||||| ||||||| || ||| || |||||| ||| |||| ||||| | |||||||||||| ||||||||||    
T  54190966 aagggccatgcataacaatgtcatgactcttaagtccataaatattgtatttacaaagattggttttgctatccaaaaag 54191045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 501
Target Start/End: Complemental strand, 132377 - 132251
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||||||| ||||| ||||||| |||||  ||||| ||||| |||||||||||| || || | ||||  |||| |||||||  || | ||||| ||||||    
T  132377 aagggtcaagcataacaatgtcatgtcttttaggttcatgattgttgtgtttacaagaatcgattttatcatctaaaaaggtataacggtgcagcttgtt 132278  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
     |||| || ||||| ||||||| ||||    
T  132277 ccccgcttgccttctattcatgcgtaa 132251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 501
Target Start/End: Complemental strand, 12053415 - 12053333
Alignment:
Q  419 ttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||   ||| ||||||| | | || ||||| ||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaa 12053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 28739890 - 28739845
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgttta 427  Q
    ||||||| ||||||  |||||||||||||||| |||||||||||||    
T  28739890 atgcataacaatgttatgtctcctaggtccataaatgttgtgttta 28739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 454
Target Start/End: Original strand, 22449812 - 22449879
Alignment:
Q  386 atagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||| | |||  ||| |||||||||||||||||||||| ||||| ||||| |||| ||||||    
T  22449812 atagcaatgtcatatcttatagatccatgaatgttgtgtttacga-gattgattttgtcatctaaaaag 22449879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 47585153 - 47585209
Alignment:
Q  405 taggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    |||||| || ||| |||||||||||| ||||||||||| |||| ||||||| |||||    
T  47585153 taggtctataaattttgtgtttacgaagattggttttgtcatctaaaaaggtttagc 47585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 33239 - 33116
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    |||||||||||||||| |  ||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| || ||||| |||||||||    
T  33239 ggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcc 33140  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
     | || ||||| ||||| ||||||    
T  33139 tgcttgccttctattcaagtgtaa 33116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 4413184 - 4413307
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||  |||| | ||| |||||||||    
T  4413184 ggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcc 4413283  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    |  || ||||| ||||| ||||||    
T  4413284 cacttgccttctattcaagtgtaa 4413307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 378 - 501
Target Start/End: Original strand, 41868026 - 41868148
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||   |||| | |||||||||||||    
T  41868026 ggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaacttgttgcc 41868124  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
    || || | ||| ||||| ||||||    
T  41868125 cgcttgctttctattcaagtgtaa 41868148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 13413340 - 13413262
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggc 456  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  13413340 ggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggc 13413262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 378 - 501
Target Start/End: Complemental strand, 17344627 - 17344504
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||  || | | ||| |||||||||    
T  17344627 ggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgcc 17344528  T
Q  478 cgttttccttccattcatgtgtaa 501  Q
     | || ||||| ||||| ||||||    
T  17344527 ggcttgccttctattcaagtgtaa 17344504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 9685533 - 9685634
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcc 477  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||  |||| | ||| |||||||||    
T  9685533 ggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcc 9685632  T
Q  478 cg 479  Q
    ||    
T  9685633 cg 9685634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 18745074 - 18745149
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||||| | | ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  18745074 tcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaagg 18745149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 30602430 - 30602353
Alignment:
Q  426 tacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaatt 503  Q
    ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||  | ||||| ||||||||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaatt 30602353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 27502354 - 27502274
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| |||||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||||| |||||||||||    
T  27502354 aagggttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaagg 27502274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 3208406 - 3208485
Alignment:
Q  422 tgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||||| ||||| ||||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaa 3208485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 19161901 - 19161977
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||| ||||||| ||||||||||||| ||||||  ||||||| ||||||||| ||||| |||||||||||    
T  19161901 ggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatccaaaaag 19161977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 27494303 - 27494223
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    |||||| ||| ||||||||||  ||||||||| ||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  27494303 aagggttatgtatagcaatgttatgtctcctaagtctatgaatattgtgtttacgaatattggttttgccatccaaaaagg 27494223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 44686408 - 44686348
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggatt 435  Q
    |||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  44686408 aagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgtttacgaggatt 44686348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 15515286 - 15515340
Alignment:
Q  399 gtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  15515286 gtctcctaggtccaccaatgttgtgttcacgaggattggttttgccatccaaaaa 15515340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 28224969 - 28224912
Alignment:
Q  398 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||    
T  28224969 tgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaagg 28224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 3825713 - 3825639
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||||||| || ||| | ||||| |||||||||||    
T  3825713 tcatgcatagcaatgtcatgtcttctaggaccataaatgttgtgtttatgaagatcgattttgtcatccaaaaag 3825639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 11921348 - 11921398
Alignment:
Q  404 ctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  11921348 ctaggtccatgaatgttgtgtttactaggattagtttcgccatccaaaaag 11921398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 23485056 - 23485129
Alignment:
Q  380 tcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||| |||||   ||||||||||||||||||| ||||||||||| |  ||||||||||||| |||||||    
T  23485056 tcatgcataacaatgctatgtctcctaggtccatgaacgttgtgtttacaaaaattggttttgccaaccaaaaa 23485129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 20142872 - 20142935
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttg 442  Q
    ||||||||||| ||||||| |||||||||||| |||| |||||||||| ||||| ||||||||||    
T  20142872 ggtcatgcataacaatgtcatgtctcctaggt-catggatgttgtgttgacgagtattggttttg 20142935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 41702209 - 41702138
Alignment:
Q  430 aggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    ||||||||||||||||||||||||||| |||  | ||| ||||||||||  || ||||| ||||||||||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaa 41702138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 7760960 - 7761062
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||| |||||| |||||||||  |||||| || || || ||||| |||| ||||||  |||| ||||| |||||||||||||||||| | ||||||| ||    
T  7760960 aaggatcatgcgtagcaatgtgatgtctcataagttcaagaatgatgtgcttacgaaaattgattttgacatccaaaaaggcttagcggcgcaacttatt 7761059  T
Q  475 gcc 477  Q
    |||    
T  7761060 gcc 7761062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 44684973 - 44685059
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagc 461  Q
    |||||||||||||| |||| |  |||||  || |||||||||||||||||||| ||| ||| |||||  |||| |||||||||||||    
T  44684973 aagggtcatgcataacaatattatgtcttataagtccatgaatgttgtgtttatgagaattagttttttcatctaaaaaggcttagc 44685059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 475
Target Start/End: Original strand, 17663467 - 17663560
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 475  Q
    |||||||||||||  ||||||  |||||| ||||||||| | |||| |||| |||||||||| ||| | ||||| |||| |||||| |||||||    
T  17663467 atgcatagcaatgctgtgtcttttaggtctatgaatgttatttttaagaggtttggttttgcaatctagaaagggttagtagtgcagcttgttg 17663560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 475
Target Start/End: Original strand, 17714491 - 17714584
Alignment:
Q  382 atgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttg 475  Q
    |||||||||||||  ||||||  |||||| ||||||||| | |||| |||| |||||||||| ||| | ||||| |||| |||||| |||||||    
T  17714491 atgcatagcaatgctgtgtcttttaggtctatgaatgttatttttaagaggtttggttttgcaatctagaaagggttagtagtgcagcttgttg 17714584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 33612670 - 33612711
Alignment:
Q  385 catagcaatgtcgtgtctcctaggtccatgaatgttgtgttt 426  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  33612670 catagcaatgtcttgtcccctaggtccatgaatgttgtgttt 33612711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 1296192 - 1296272
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 455  Q
    ||||||||||||||| ||| || ||| ||||  ||| ||||||||| |||||| ||| ||||||||| | |||||||||||    
T  1296192 aagggtcatgcatagtaatatcatgtttcctgtgtctatgaatgttttgtttatgagaattggttttacaatccaaaaagg 1296272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 10296669 - 10296720
Alignment:
Q  403 cctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||| ||||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  10296669 cctaagtccatggatgttgcgtttaagaggattagttttgccatccaaaaag 10296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 492
Target Start/End: Original strand, 18892375 - 18892438
Alignment:
Q  429 gaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccatt 492  Q
    |||||| ||||||| |||||| ||||| ||||| ||||| ||||||||||||||  ||||||||    
T  18892375 gaggatcggttttgtcatccagaaaggattagcggtgcagcttgttgcccgtttgtcttccatt 18892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 450
Target Start/End: Complemental strand, 24765253 - 24765178
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaa 450  Q
    ||||||||| |||| ||||||| |||||| |||||||||||||||| || ||| || ||||  ||||| |||||||    
T  24765253 aagggtcatccataacaatgtcatgtctcttaggtccatgaatgttctggttatgatgattaattttggcatccaa 24765178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 7863425 - 7863397
Alignment:
Q  38 ctctattcactaaactttacaaatattca 66  Q
    |||||||||||||||||||||||||||||    
T  7863425 ctctattcactaaactttacaaatattca 7863397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 20143119 - 20143179
Alignment:
Q  434 ttggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattca 494  Q
    ||||||||||||||||||||||  |||| | ||||||||||| | |||| ||||| |||||    
T  20143119 ttggttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattca 20143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 26407839 - 26407887
Alignment:
Q  405 taggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||| |||||||||||||||||||| ||||| |||||| |||| ||||    
T  26407839 taggttcatgaatgttgtgtttacgatgattgattttgctatcctaaaa 26407887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 453
Target Start/End: Complemental strand, 42122763 - 42122731
Alignment:
Q  421 gtgtttacgaggattggttttgccatccaaaaa 453  Q
    ||||||||||||| |||||||||||||||||||    
T  42122763 gtgtttacgaggactggttttgccatccaaaaa 42122731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 379 - 501
Target Start/End: Original strand, 303 - 425
Alignment:
Q  379 gtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgccc 478  Q
    ||||| |||||||||||| |||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||| |  | ||| |||||||||     
T  303 gtcatacatagcaatgtcatgtctcctagatcgatgaacgttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatcttgttgccg 402  T
Q  479 gttttccttccattcatgtgtaa 501  Q
    | |||||||| ||||| ||||||    
T  403 gctttccttctattcaagtgtaa 425  T

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Target: scaffold0470 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 7591 - 7516
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 454  Q
    |||||||||||  |||||| |||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  7591 ggtcatgcatat-aatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 7516  T

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Target: scaffold0490 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 6323 - 6279
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgt 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  6323 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 6279  T

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Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 501
Target Start/End: Complemental strand, 6837 - 6754
Alignment:
Q  418 gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    |||||||||||||| |||||||||||||||||||||||  ||||   ||| ||||||||||| || ||||| ||||| ||||||    
T  6837 gttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

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Target: scaffold0244 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 494
Target Start/End: Original strand, 16807 - 16888
Alignment:
Q  413 tgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattca 494  Q
    |||||||||| || ||||| |||| ||||||||||||||||||  |||| ||||| | |||||||| ||| |||||||||||    
T  16807 tgaatgttgtattcacgagaattgattttgccatccaaaaaggtctagcggtgcagcatgttgcccttttgccttccattca 16888  T

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Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 476
Target Start/End: Complemental strand, 49407 - 49306
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    |||| ||||||||| ||||||| |||||| || |||||||||||| || |||||||| |||| |||| ||||| |||| ||  |||| | ||||||||||    
T  49407 aaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaattgatttttccatctaaaacggtctagcggcgcaacttgtt 49308  T
Q  475 gc 476  Q
    ||    
T  49307 gc 49306  T

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Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 17397 - 17468
Alignment:
Q  378 ggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaa 451  Q
    |||||||||||  |||||  |||||| ||||||||||||||||||||||| || ||||| |||||| |||||||    
T  17397 ggtcatgcataataatgt--tgtctcttaggtccatgaatgttgtgtttaagatgattgcttttgctatccaaa 17468  T

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Target: scaffold0309 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 501
Target Start/End: Complemental strand, 5276 - 5190
Alignment:
Q  415 aatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgttttccttccattcatgtgtaa 501  Q
    ||||||||||| ||||||||||  |||||||||||||||||  |||| | ||| ||||||||||| || | ||| ||||| ||||||    
T  5276 aatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaa 5190  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 47635 - 47761
Alignment:
Q  375 aagggtcatgcatagcaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 474  Q
    ||||| |||||||| |||||||  || || |||| ||||||||||| ||||||| | ||||| |||| ||||| ||||| | ||||| |  |||||||||    
T  47635 aaggggcatgcataacaatgtcacgtttcataggcccatgaatgttatgtttacaaagattgattttaccatcgaaaaatgtttagcggcacaacttgtt 47734  T
Q  475 gcccgttttccttccattcatgtgtaa 501  Q
    | ||||||  |||| ||||| ||||||    
T  47735 gtccgtttgtcttctattcacgtgtaa 47761  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 4378 - 4434
Alignment:
Q  391 aatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatc 447  Q
    |||||| |||||| || |||||| ||||||||||||||||  |||||||||| ||||    
T  4378 aatgtcatgtctcataagtccataaatgttgtgtttacgaatattggttttgtcatc 4434  T

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