View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_41 (Length: 292)
Name: NF1602_low_41
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 19373684 - 19373949
Alignment:
| Q |
20 |
gtcccgcttgggcagcaacgggagaatgtcaacgtaaccctgtctacatggttggatctcctgattactatggtacatgtcggaaaagctgcaatgcatg |
119 |
Q |
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| T |
19373684 |
gtcccgcttgggcagcaacgggagaatgtcaacgtaaccctgtctacatggttggatctcctgattactatggtacatgtcggaaaagctgcaatgcatg |
19373783 |
T |
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| Q |
120 |
ctgatgagaagttggttttgcataannnnnnnnacgtggttgcttttttaatttgattggagaataggaacatatagtagagtgaattaactgatattct |
219 |
Q |
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| T |
19373784 |
ctgatgagaagttggttttgcataattttttttacgtggttgcttttttaatttgattggagaataggaacatatagtagagtgaattaactgatattct |
19373883 |
T |
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| Q |
220 |
caggatgttcttgagcaactatgatgttcctcaattaactaggcagtatattatttgcctttgctt |
285 |
Q |
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| T |
19373884 |
caggatgttcttgagcaactatgatgttcctcaattaactaggcagtatattatttgcctttgctt |
19373949 |
T |
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