View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_42 (Length: 292)
Name: NF1602_low_42
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 48001447 - 48001715
Alignment:
| Q |
1 |
acttgttggatgatgatggagatatggctgagctatatttgacagataagttggctcaaaagaagtttgaaaattcttctactttttcatccatgaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48001447 |
acttgttggatgatgatggagatatggctgagctatatttgacagataagttggctcaaaagaagtttgaaaattcttctactttttcatccatgaataa |
48001546 |
T |
|
| Q |
101 |
taacggggatgacatgatgatgaaccgggttcttcaaccaaatatagttgacaggtatttcatttcatttcattgtgaatttgatctgatatggacatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48001547 |
taacggggatgacatgatgatgaaccgggttcttcaaccaaatatagttgacaggt-----atttcatttcattgtgaatttgatctgatatggacatgt |
48001641 |
T |
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| Q |
201 |
cttaccataacaaatattttatgtcgtacaatataattaattcttcattattttattaggactcgtcacgaaat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48001642 |
cttaccataacaaatattttatgtcgtacaatataattaattcttcattattttattaggactggtcacgaaat |
48001715 |
T |
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