View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_44 (Length: 287)
Name: NF1602_low_44
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 41656540 - 41656280
Alignment:
| Q |
11 |
gagacaaaatggaatgaacctctcattaggcatatctttagtcatgacattgctgctgtcatattaaatatgcctctgattgttcaggtacagcaggata |
110 |
Q |
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| T |
41656540 |
gagaaaaaatggaatgaacctctcattaggcatatctttagtcatgacattgctgctgtcatattaaatatgcctctgattgttcaggtacagcaggata |
41656441 |
T |
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| Q |
111 |
aggtcatttggaaagcggaaaggaacgggaaatattctgtatgtagcgcgtatagactgtgtattgaggaattaattgatacgtctcatttacggcaccc |
210 |
Q |
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| T |
41656440 |
agctcatttggaaagcggaaaggaacgggaaatattctgtatgtagcgcgtatagactgtgtgttgaggaattaattgatacgtctcatttacggcaccc |
41656341 |
T |
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| Q |
211 |
ggggtattggtcaggtatttggaggttaaaggttccgccaaaggttagaaatttaatttgg |
271 |
Q |
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| T |
41656340 |
ggggtattggtcaggtatttggaggttaaaggttccgccaaaggttagaaatttaatttgg |
41656280 |
T |
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