View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_48 (Length: 275)

Name: NF1602_low_48
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_48
NF1602_low_48
[»] chr8 (2 HSPs)
chr8 (19-263)||(26589119-26589363)
chr8 (191-250)||(1163443-1163501)
[»] chr1 (2 HSPs)
chr1 (47-263)||(18550398-18550613)
chr1 (179-263)||(2980429-2980513)
[»] chr6 (3 HSPs)
chr6 (27-263)||(32934368-32934603)
chr6 (27-263)||(7733364-7733597)
chr6 (179-263)||(24586217-24586301)
[»] chr2 (3 HSPs)
chr2 (27-172)||(4791814-4791959)
chr2 (221-263)||(4791735-4791777)
chr2 (132-169)||(4791779-4791816)
[»] chr5 (1 HSPs)
chr5 (181-263)||(12384189-12384271)
[»] chr3 (1 HSPs)
chr3 (179-263)||(5700550-5700634)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 26589363 - 26589119
Alignment:
Q  19 acatagctgagcgattctcttccgatttcacaccacaccactattgttgttattttgtagcaattcactttcaattccacaccatgtcaccacaccacca 118  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  26589363 acatagctgagcgattctcttctggtttcacaccacaccactattgttgttattttgtagcaattcacttccaattccacatcatgtcaccacaccacca 26589264  T
Q  119 gtataagtagtgattcacttccaattccacaccactattattgcaaaaaccttctatttctgttgttgttgctttgttaataaacattaattccatgtaa 218  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||    
T  26589263 gtataagtagtgattcacttccagttccacactactattgttgcaaaaaccttatgtttctgttgttgttgctttgttaataaacaataattccatgtaa 26589164  T
Q  219 gttgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26589163 gttgttacctttattcttatttttgtcttctagttctactatatt 26589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 1163443 - 1163501
Alignment:
Q  191 tttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtcttcta 250  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  1163443 tttgttaacaaatattaat-ccatgtaagttgttacctttattcttatttttgtcttcta 1163501  T

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Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 47 - 263
Target Start/End: Complemental strand, 18550613 - 18550398
Alignment:
Q  47 cacaccacaccactattgttgttattttgtagcaattcactttcaattccacaccatgtcaccacaccaccagtataagtagtgattcacttccaattcc 146  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  18550613 cacaccacaccactattgttgttattttgtagcgattcacttccaatttcacaccatgtcaccacaccaccagtataagtagcgattcacttccagttcc 18550514  T
Q  147 acaccactattattgcaaaaaccttctatttctgttgttgttgctttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtct 246  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  18550513 acaccactattgttgcaaaaaccttct-cttctgttgttgttgctttgttaataaacattaatcccatgtaagttgttacctttaatcttatttttgtct 18550415  T
Q  247 tctagttctactatatt 263  Q
    |||||||||||||||||    
T  18550414 tctagttctactatatt 18550398  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 2980429 - 2980513
Alignment:
Q  179 tgttgttgttgctttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    ||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  2980429 tgttgttgttattttgttaataaacattaatcccctgtaagttgttacctttattcttatttttgtcttctaattctattatatt 2980513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 27 - 263
Target Start/End: Complemental strand, 32934603 - 32934368
Alignment:
Q  27 gagcgattctcttccgatttcacaccacaccactattgttgttattttgtagcaattcactttcaattccacaccatgtcaccacaccaccagtataagt 126  Q
    ||||||||| |||||  || ||||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||||||||    
T  32934603 gagcgattcacttccagttccacaccacaccactattgttgttattttgtagtgattcatttccaattccacaccatgtcaccacaccaccagtataagt 32934504  T
Q  127 agtgattcacttccaattccacaccactattattgcaaaaaccttctatttctgttgttgttgctttgttaataaacattaattccatgtaagttgttac 226  Q
    || |||||||||||| ||||||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32934503 agcgattcacttccagttccacaccactattgttgcaaaaactttct-gttctgttgttgttgctttgttaataaacattaatcccatgtaagatgttac 32934405  T
Q  227 ctttattcttatttttgtcttctagttctactatatt 263  Q
     ||||||||||| ||||||||||||||||||||||||    
T  32934404 atttattcttatctttgtcttctagttctactatatt 32934368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 263
Target Start/End: Complemental strand, 7733597 - 7733364
Alignment:
Q  27 gagcgattctcttccgatttcacaccacaccactattgttgttattttgtagcaattcactttcaattccacaccatgtcaccacaccaccagtataagt 126  Q
    ||||||||| |||||  || |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||| |||||||||    
T  7733597 gagcgattcacttccagttccacaccgcaccactattgttgttattttgtagcgattcacttccaattccacaccat--caccacaccactagtataagt 7733500  T
Q  127 agtgattcacttccaattccacaccactattattgcaaaaaccttctatttctgttgttgttgctttgttaataaacattaattccatgtaagttgttac 226  Q
    ||  ||||||||||| ||||||| ||||||| |||||||||| || | ||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7733499 agctattcacttccagttccacagcactattgttgcaaaaacattatgtta-tgttgttgttgctatgttaataaacattaatcccatgtaagttgttac 7733401  T
Q  227 ctttattcttatttttgtcttctagttctactatatt 263  Q
    |||||||||||||||||||||||||||||||||||||    
T  7733400 ctttattcttatttttgtcttctagttctactatatt 7733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 24586301 - 24586217
Alignment:
Q  179 tgttgttgttgctttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  24586301 tgttgttgttattttgttaataaacattaatcccatgtaagttgttacctttattcttatttttgtcttctaattctattatatt 24586217  T

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Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 4791959 - 4791814
Alignment:
Q  27 gagcgattctcttccgatttcacaccacaccactattgttgttattttgtagcaattcactttcaattccacaccatgtcaccacaccaccagtataagt 126  Q
    ||||||||| ||| | ||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||||||||    
T  4791959 gagcgattcacttacaattccacaccacaccactattgttgttattttgtagtgattcacttccaattccacaccatgtcaccacaccaccggtataagt 4791860  T
Q  127 agtgattcacttccaattccacaccactattattgcaaaaaccttc 172  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  4791859 agtgattcacttccagttccacaccactattgttgcaaaaaccttc 4791814  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 4791777 - 4791735
Alignment:
Q  221 tgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  4791777 tgttacctttaatcttatttttgtcttctagttctactatatt 4791735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 4791816 - 4791779
Alignment:
Q  132 ttcacttccaattccacaccactattattgcaaaaacc 169  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4791816 ttcacttccaattccacaccactattgttgcaaaaacc 4791779  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 12384271 - 12384189
Alignment:
Q  181 ttgttgttgctttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    ||||||||  ||||||||||||||||||| || | |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  12384271 ttgttgttattttgttaataaacattaatcccctttaagttgttatctttatttttatttttgtcttctagttctactatatt 12384189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 5700550 - 5700634
Alignment:
Q  179 tgttgttgttgctttgttaataaacattaattccatgtaagttgttacctttattcttatttttgtcttctagttctactatatt 263  Q
    ||||||||||  ||||||||||||||||||| || |||||||||||||||||||  |||||||||||||||| ||||| ||||||    
T  5700550 tgttgttgttattttgttaataaacattaatcccctgtaagttgttacctttatctttatttttgtcttctaattctattatatt 5700634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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