View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1602_low_50 (Length: 272)
Name: NF1602_low_50
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 35340790 - 35341032
Alignment:
| Q |
11 |
cagagagctggttgtttgaaagatgcaactcggttaaattcgaaagccggcctatttctacaggaatttgaccttcaaattcattgatgttgaggccaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35340790 |
cagagagctggttgtttgaaagatgcaactcggttaaattcgaaagccggcctatttctacaggaatttgaccttcaaattcattgatgttgaggccaag |
35340889 |
T |
|
| Q |
111 |
aacttgcaaacttgaacagtttccaatttcctttggtataaaaccagagaaagtgttttgagacagattaaggtgaagcaagtgaaccaaaccaccaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35340890 |
aacttgcaaacttgaacagtttccaatttcctttggtatagaaccagagaaagtgttttgagacagattaaggtgaagcaagtgaaccaaaccaccaatg |
35340989 |
T |
|
| Q |
211 |
ctggaagacaatgagcctgagagattcattgcatgcaagtcaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35340990 |
ctggaagacaatgagcctgagagattcattgcatgcaagtcaa |
35341032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University