View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_52 (Length: 264)
Name: NF1602_low_52
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12521072 - 12520861
Alignment:
| Q |
1 |
ttaatttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttctgcatatggcgcattggttgtgtgcctcaacgcaca |
100 |
Q |
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| T |
12521072 |
ttaatttcgagttacaagtcataaatgagagaatttcaaaagtttgtaacaaccattttggttctgcacatggcgcattggttgtgtgcctcaacgcaca |
12520973 |
T |
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| Q |
101 |
ggtcgtgtttgttgatgtcctttgaaattatgccttgtatgaaggcgcacaggtcgtgttccagggcgcactggtcgtacgccaaccactgcctattttc |
200 |
Q |
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| T |
12520972 |
ggtcgtgtttgttgatgtcctttgaaattatgccctttatgaaggcgcacaggt---------------------cgtacgccaaccactgcctattttc |
12520894 |
T |
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| Q |
201 |
acaaattttcttgaagcaagcacacggattgtg |
233 |
Q |
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| T |
12520893 |
acaaattttcttgaagcaagcacacgggttgtg |
12520861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53000671 - 53000735
Alignment:
| Q |
1 |
ttaatttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttct |
65 |
Q |
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| T |
53000671 |
ttaatttcgagttacaagccataaactatagaattccaaaggtttgtaacaaccatttttgttct |
53000735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 11645365 - 11645419
Alignment:
| Q |
89 |
cctcaacgcacaggtcgtgtttgttgatgtcctttgaaattatgccttgtatgaa |
143 |
Q |
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| T |
11645365 |
cctcaacgcacgaatcgtgcttgttgatgtcctttgaaattatgcttagtatgaa |
11645419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22826559 - 22826617
Alignment:
| Q |
1 |
ttaatttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccatttt |
59 |
Q |
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|||| ||||| ||||||||| ||||| ||| |||| |||||||||||||||||||||| |
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| T |
22826559 |
ttaaattcgatttacaagtcttaaattagaaaattgcaaaagtttgtaacaaccatttt |
22826617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 31603803 - 31603868
Alignment:
| Q |
4 |
atttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttctgcat |
69 |
Q |
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| T |
31603803 |
atttcgagttacaagctataaaccatagaattctaaaggtttgtaacaaccgtttttgttctgcat |
31603868 |
T |
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