View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_54 (Length: 250)

Name: NF1602_low_54
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_54
NF1602_low_54
[»] chr4 (5 HSPs)
chr4 (105-240)||(37002520-37002650)
chr4 (1-60)||(37002416-37002475)
chr4 (115-175)||(36982838-36982898)
chr4 (115-175)||(36998303-36998363)
chr4 (115-179)||(36989320-36989384)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 37002520 - 37002650
Alignment:
Q  105 gagggatatacataccatgcaaaatgatgaaggcatttgaaagccagtttaagaaaccatgaagaagccatgtgatagagaaagagaagaggaatcaaa- 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||     
T  37002520 gagggatatacataccatgcaaaatgatgaagccatttgaaagccagtttaagaaaccatgaagaagccatgtgat------agagaagaggaatcaaat 37002613  T
Q  204 ttatttcaaacattcaatggctgctgtattagaataa 240  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37002614 ttatttcaaacattcaatggctgttgtattagaataa 37002650  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37002416 - 37002475
Alignment:
Q  1 ttatacatgaaactgataatttgaagatatatgagaaatcataagtttatttattttttc 60  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  37002416 ttatacatgaaactgataatgtgaagatatatgagaaaacataagtgtatttattttttc 37002475  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 36982838 - 36982898
Alignment:
Q  115 cataccatgcaaaatgatgaaggcatttgaaagccagtttaagaaaccatgaagaagccat 175  Q
    |||||||||||||||||| ||||||||||||||  ||||| ||||||||||||||||||||    
T  36982838 cataccatgcaaaatgataaaggcatttgaaagttagtttgagaaaccatgaagaagccat 36982898  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 36998303 - 36998363
Alignment:
Q  115 cataccatgcaaaatgatgaaggcatttgaaagccagtttaagaaaccatgaagaagccat 175  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||    
T  36998303 cataccatgcaaaatgatgaatgcatttgaaagcaagtttgagaagccatgaagaagccat 36998363  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 36989320 - 36989384
Alignment:
Q  115 cataccatgcaaaatgatgaaggcatttgaaagccagtttaagaaaccatgaagaagccatgtga 179  Q
    |||||||||| || ||||||||| |||||||| | ||||| || ||  |||||||||||||||||    
T  36989320 cataccatgcgaagtgatgaagggatttgaaaacgagtttgagcaagaatgaagaagccatgtga 36989384  T

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