View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_55 (Length: 247)
Name: NF1602_low_55
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 2846427 - 2846246
Alignment:
| Q |
53 |
cccacttgaaaattatcagaaaggacccttctatcaacattcttggacctgaagtaaggtggtgtaacgacagctttaccattacagtgaaaatcaacaa |
152 |
Q |
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| T |
2846427 |
cccacttgaaaattatcagaaaggacccttctatcaacattcttggacctgaagtaaggtggtgtaacaacagctttaccattacagtgaaaatcaacaa |
2846328 |
T |
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| Q |
153 |
catcatcatc---atcacgacgatgtgaagttgaaacaggagcaatttccataaccccattaggcaattctttcctcaattc |
231 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2846327 |
catcatcatcatcatcacgacgatgtgaagttgaaacaggagcaatttccataaccccattaggtaattctttcctcaattc |
2846246 |
T |
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