View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_58 (Length: 239)
Name: NF1602_low_58
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 33294414 - 33294330
Alignment:
| Q |
28 |
aagaaactaatatggagtgacatagtaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
112 |
Q |
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| T |
33294414 |
aagaaactaatatagagtgacatattaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
33294330 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 33294256 - 33294214
Alignment:
| Q |
181 |
aggataaaattgaaaccgtgtgttgatccatttttcatctctg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33294256 |
aggataaaattgaaaccgtgtgttgatccatttttcatctctg |
33294214 |
T |
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