View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1602_low_6 (Length: 526)
Name: NF1602_low_6
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_6 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 44 - 515
Target Start/End: Complemental strand, 5438533 - 5438062
Alignment:
| Q |
44 |
acatggaagatgcatacacattttaggacacgaagatccaataggattatgacccaatcattgggcgcaacccacacaagcatgaggggtagaagctgag |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438533 |
acatggaagatgcatacacattttaggacacgaagatccaataggattatgacccaatcattgggcgcaacccacacaagcatgaggggtagaagctgag |
5438434 |
T |
|
| Q |
144 |
ggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatttgagccacga |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438433 |
ggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgatttgagccacga |
5438334 |
T |
|
| Q |
244 |
ttataggagaccaattaattagtggcttaagccacaatttacacattagtttataagggagaataagagagtgtagaaggcattccatacctttctatca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438333 |
ttataggagaccaattaattagtggcttaagccacaatttacacattagtttataagggagaataagagagtgtagaaggcattccatacctttctatca |
5438234 |
T |
|
| Q |
344 |
aatagttataaggagagtcaactctcttgtaggagctatactgtgcattaggagtctttgactctggtttatctccttcatttttctcttttcaccattg |
443 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438233 |
aatagttataaggagagtcaactctcgtgtaggagctatactgtgcattaggagtctttgactctggtttatctccttcatttttctcttttcaccattg |
5438134 |
T |
|
| Q |
444 |
tagagctcttaaatcatcacttttcattaaatgaaatacaatttcattctcttgaatttgcagttctttcat |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
5438133 |
tagagctcttaaatcatcacttttcattaaatgaaatacaatttcgttctcttgaatttgcggttctttcat |
5438062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 128 - 328
Target Start/End: Complemental strand, 5435922 - 5435715
Alignment:
| Q |
128 |
aggggtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatca |
227 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||| | |
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|
| T |
5435922 |
aggggtagaagcttagggaagcttggtaacttgagccagagtcttaggaataataataaattagtggtttgacccacacttttaggataattattaatta |
5435823 |
T |
|
| Q |
228 |
gtgatttgagccacgattataggagaccaattaattagtggcttaagccacaattta-------cacattagtttataagggagaataagagagtgtaga |
320 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| || |
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| T |
5435822 |
gtgatttgagccacaatttcaggagatcaattaattagtggcttaaaccacaatttaaggagaccacattaatttatcagggagaataagagagtgtcga |
5435723 |
T |
|
| Q |
321 |
aggcattc |
328 |
Q |
| |
|
||||||| |
|
|
| T |
5435722 |
cggcattc |
5435715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 5435698 - 5435583
Alignment:
| Q |
390 |
attaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaatttc |
488 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |
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|
| T |
5435698 |
attaggagtctttgactgtggtttatctctttcatttttctgttttcaccattgtaaagctcttaagttcatcactttttattaaataaaatacaatttc |
5435599 |
T |
|
| Q |
489 |
attctcttgaatttgc |
504 |
Q |
| |
|
|||||||||||||||| |
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| T |
5435598 |
attctcttgaatttgc |
5435583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 22280669 - 22280628
Alignment:
| Q |
184 |
ttaattaatggtttgacccacacttttaggagaataattaat |
225 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
22280669 |
ttaattagtggtttgacccacacttttaggagaataattaat |
22280628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 503
Target Start/End: Original strand, 9067787 - 9068005
Alignment:
| Q |
293 |
tttataagggagaataagagagtgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtgcatt |
392 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||| | |||||| |||||||||| ||||||||||| || || ||| |
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| T |
9067787 |
tttataagagagaatgagagagtgtagaaggcattcagtacctttctttcaaatagttgttaggagattcaactctctggtaggagctatgctctggatt |
9067886 |
T |
|
| Q |
393 |
aggagtctttgactctggttta-------tctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaa |
484 |
Q |
| |
|
|| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
9067887 |
agtagtctttgactctggtttagacgtttagtcctttcagtttctgttttcaccattgtagagctcttaagctcatcatttttcattaaataaaatacaa |
9067986 |
T |
|
| Q |
485 |
tttcattctcttgaatttg |
503 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
9067987 |
tttcattctcatgaatttg |
9068005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 9067647 - 9067736
Alignment:
| Q |
133 |
tagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataatt |
222 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||| | |||||| | |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
9067647 |
tagaagctgaggggagcttggtggcttgatccacaatcttagtagtaatggttaattagtggtttgacccacacttttaggagaataatt |
9067736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 17300905 - 17300821
Alignment:
| Q |
132 |
gtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggaga |
216 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||| | ||||| ||| |||||||||||| || ||||| ||| | |||||||||| |
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|
| T |
17300905 |
gtagaagctgagggaagctttgtggcttgagccacaatcttaagaaaaataattaattagtgatttgagccataattttaggaga |
17300821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 44672778 - 44672728
Alignment:
| Q |
404 |
actctggtttatctccttcatttttctcttttcaccattgtagagctcttaa |
455 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
44672778 |
actctggtttatctctttcattttt-tgttttcaccattgtagagctcttaa |
44672728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 289 - 503
Target Start/End: Complemental strand, 12021720 - 12021518
Alignment:
| Q |
289 |
ttagtttataagggagaataagagagtgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtg |
388 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||| ||||||||||| || || |
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|
| T |
12021720 |
ttagtttataaaggaggat--gagagtgtagaaggcattcagtagctttctatcaaatagtaattaggagagtcaactctctggtaggagctatgctctg |
12021623 |
T |
|
| Q |
389 |
cattaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaattt |
487 |
Q |
| |
|
||||||||||||| || || |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
12021622 |
gattaggagtctttaaccct-----------ttca-atttctgttttcaccattgtagagctcttaagctcatcacttttcattaaataaaatacaattt |
12021535 |
T |
|
| Q |
488 |
cattc-tcttgaatttg |
503 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
12021534 |
cattcatcttgaatttg |
12021518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 12021846 - 12021746
Alignment:
| Q |
133 |
tagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataattaatcagtgat |
232 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||| | |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
12021846 |
tagaagctgaggggagcttggtggcttgagccacaatcttaggagtaatggttaattagtggtttgacccacacttttaggagaataattaattagtgat |
12021747 |
T |
|
| Q |
233 |
t |
233 |
Q |
| |
|
| |
|
|
| T |
12021746 |
t |
12021746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 3160338 - 3160372
Alignment:
| Q |
391 |
ttaggagtctttgactctggtttatctccttcatt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
3160338 |
ttaggagtctttgactctggtttatctctttcatt |
3160372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 50694616 - 50694676
Alignment:
| Q |
392 |
taggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctctt |
453 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |
|
|
| T |
50694616 |
taggagtctttgactctggtttatctctttca-ttttctgttttcaccattatagagctctt |
50694676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 77774 - 77712
Alignment:
| Q |
67 |
taggacacgaagatccaataggatt-atgacccaatcattgggcgcaacccacacaagcatga |
128 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
77774 |
taggacaccaaaatccaataggattgatgactcaatcattgggcccaacccacacaagcatga |
77712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 21090162 - 21090210
Alignment:
| Q |
404 |
actctggtttatctccttcatttttctcttttcaccattgtagagctctt |
453 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
21090162 |
actctggtttatctctttcatttta-tgttttcaccattgtagagctctt |
21090210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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