View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_64 (Length: 223)
Name: NF1602_low_64
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_64 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 14020384 - 14020607
Alignment:
| Q |
4 |
attctcgtatttctctgctgtaactctatcagtattgtctattatcaaatactaactatcttaggctttttggtgaaagaaacataaattaatttttatt |
103 |
Q |
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| T |
14020384 |
attctcgtatttctctgctgtaactctatcagtattgtcaattatcaaatactaactatcttaggctttttggtgaaagaaacataaattaatttttgtt |
14020483 |
T |
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| Q |
104 |
gtatgtgtaagatgatcccttagacaagtgttctttggggttgaaatgtgaacataaatacatt----tcaattccaccggtcatgtgctgaaattccgt |
199 |
Q |
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| T |
14020484 |
gtatgtgtaagatgatcccttagacaagtgttctttggggttgaaatgtgaacataaatacattttaattaattccaccggtcatgtgctgaaattccgt |
14020583 |
T |
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| Q |
200 |
tagaccaatacattttttgagctc |
223 |
Q |
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| T |
14020584 |
tagacaaatacattttttgagctc |
14020607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 13475714 - 13475593
Alignment:
| Q |
16 |
ctctgctgtaactctatcagtattgtctattatcaaatactaactatcttaggctttttggtgaaagaaacataaattaatttttattgtatgtgtaaga |
115 |
Q |
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| T |
13475714 |
ctctgctgtaactctatcagtattgtcaattgttataaactaactatcttaagcttttaggtgaaagaaacatatataactttttgttgtatgtgtaaga |
13475615 |
T |
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| Q |
116 |
tgatcccttagacaagtgttct |
137 |
Q |
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| T |
13475614 |
tgatcccttagacaagtgttct |
13475593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 14044783 - 14044853
Alignment:
| Q |
144 |
ttgaaatgtgaacataaatacatttcaattccaccggtcatgtgctgaaattccgttagaccaatacattt |
214 |
Q |
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| T |
14044783 |
ttgaaatgtgaacataaatacattttaattccagcagtcatgtgctgaaatttcgttagacaaatacattt |
14044853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 10507808 - 10507760
Alignment:
| Q |
170 |
aattccaccggtcatgtgctgaaattccgttagaccaatacattttttg |
218 |
Q |
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| T |
10507808 |
aattccacctgtcatgtgctgaaattcagatagacaaatacattttttg |
10507760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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