View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_low_7 (Length: 520)

Name: NF1602_low_7
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_low_7
NF1602_low_7
[»] chr4 (16 HSPs)
chr4 (19-506)||(22226697-22227176)
chr4 (137-237)||(31012546-31012650)
chr4 (135-224)||(9088124-9088217)
chr4 (155-239)||(31031435-31031527)
chr4 (138-188)||(5579780-5579830)
chr4 (135-197)||(9290167-9290229)
chr4 (138-197)||(17056012-17056071)
chr4 (137-245)||(53718260-53718372)
chr4 (154-234)||(50116317-50116396)
chr4 (160-194)||(53963384-53963418)
chr4 (137-198)||(13843162-13843223)
chr4 (138-215)||(25104706-25104784)
chr4 (131-178)||(21505261-21505308)
chr4 (143-197)||(28184371-28184425)
chr4 (160-190)||(45652127-45652157)
chr4 (165-237)||(35298173-35298243)
[»] chr5 (7 HSPs)
chr5 (135-196)||(11404675-11404736)
chr5 (153-224)||(14502697-14502772)
chr5 (138-242)||(2684827-2684935)
chr5 (146-195)||(38844062-38844111)
chr5 (137-197)||(34768918-34768978)
chr5 (165-194)||(35621139-35621168)
chr5 (138-190)||(3954416-3954468)
[»] chr8 (6 HSPs)
chr8 (135-197)||(3053363-3053425)
chr8 (135-224)||(26457077-26457168)
chr8 (135-192)||(32578251-32578308)
chr8 (138-195)||(2655235-2655292)
chr8 (142-237)||(32943491-32943590)
chr8 (160-189)||(5501407-5501436)
[»] chr6 (4 HSPs)
chr6 (138-235)||(24619315-24619415)
chr6 (137-237)||(1350475-1350577)
chr6 (153-237)||(29956558-29956639)
chr6 (135-215)||(8438935-8439019)
[»] chr7 (6 HSPs)
chr7 (136-196)||(45630195-45630255)
chr7 (135-215)||(44397433-44397517)
chr7 (136-194)||(5968376-5968434)
chr7 (157-197)||(30785494-30785534)
chr7 (160-197)||(5254985-5255022)
chr7 (153-217)||(4036225-4036289)
[»] chr1 (5 HSPs)
chr1 (143-197)||(48217304-48217358)
chr1 (157-224)||(44058235-44058304)
chr1 (160-194)||(49208252-49208286)
chr1 (136-194)||(24214075-24214133)
chr1 (141-197)||(25724238-25724294)
[»] chr3 (5 HSPs)
chr3 (160-225)||(47896465-47896532)
chr3 (138-197)||(51818416-51818475)
chr3 (74-136)||(47895833-47895895)
chr3 (153-194)||(19279658-19279699)
chr3 (136-193)||(48923474-48923531)
[»] chr2 (7 HSPs)
chr2 (76-215)||(13601277-13601410)
chr2 (137-215)||(32886560-32886640)
chr2 (155-235)||(26911233-26911315)
chr2 (160-194)||(38611346-38611380)
chr2 (138-184)||(44985574-44985620)
chr2 (153-183)||(22358908-22358938)
chr2 (156-192)||(43449629-43449665)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 22227176 - 22226697
Alignment:
Q  19 agaggttgatagaagaagagataccgttttaatttgtctctatgaagaaagtttgcacaaccctagataaaatttatttgaatacacatttgattgataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22227176 agaggttgatagaagaagagataccgttttaatttgtctctatgaagtaagtttgcacaaccctagataaaatttatttgaatacacacttgattgataa 22227077  T
Q  119 aatataaatgagaaatgagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttat--gtgtgcctaaatacttttgattta 216  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22227076 aatataaatgagaaatga-------tattaatttatgtgactaaattatttctcttttaaattttatcatttatatgtgtgcctaaatacttttgattta 22226984  T
Q  217 gggttgtgttcaactaagtatatcttgttcctatgtctgtttattttttcttttaaattaaaactcgactatatgtccctaattatgttttttgtttaag 316  Q
    ||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||||    
T  22226983 gggttgtgttcaactaagtatttcttatctctatgtctgtttattttttcttttaaa----aactcgactatatctccctaattatgttttttgtttaag 22226888  T
Q  317 ggatatccatttataagttatgtgttataaaacaaccatttttatgactacaaaattgcattcatcaagtgattgctaaattttagtt-aaagacaaatt 415  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  22226887 ggatgtccaattataagttatgtgttataaaacaaccatttttatgactacaaaattgcattcatcaagtgattgacaaattttagttaaaagacaaatt 22226788  T
Q  416 gttaaaaataatctaagtacttctgtaagccctctctgaacctttagttaaagataaattggtaaaaagttaatcggttcagcttttgttg 506  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  22226787 gttaaaaataatctaagtacttctgtaagctctctctggacctttagttaaagataaattggtaaaaagttaatcggttcaatttttgttg 22226697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 31012650 - 31012546
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg----tgcctaaatacttttgatttagggttgtgttcaacta 232  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||||    |||| ||||||||||||||| ||||||||| ||||||    
T  31012650 gaaatgatattaaatgatgtgactaaattatttctcttttaagttttaccatatatgtgtgtttgcccaaatacttttgatttggggttgtgtccaacta 31012551  T
Q  233 agtat 237  Q
    |||||    
T  31012550 agtat 31012546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 9088124 - 9088217
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatt----tatgtgtgcctaaatacttttgatttagggttgtg 224  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    || ||||| ||||||||||||||||| ||||||||    
T  9088124 gagaaatgatattaagtaatgtgactaaactatttctcttttaaattttatcattcaagtaagtgtgtctaaatacttttgatttggggttgtg 9088217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 31031527 - 31031435
Alignment:
Q  155 gtgactaaattatttctcttttaaattttatcatttatg--------tgtgcctaaatacttttgatttagggttgtgttcaactaagtatat 239  Q
    |||||||||||||||||||| ||||||||| || |||||        |||||||||||||||||||||| ||||||||| |||||||||||||    
T  31031527 gtgactaaattatttctcttctaaattttaccacttatgcatgtgtatgtgcctaaatacttttgatttggggttgtgtccaactaagtatat 31031435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 5579830 - 5579780
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcat 188  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  5579830 aaatgatattaaatgatgtgactaaattatttctcttttaaattttatcat 5579780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 9290229 - 9290167
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||    
T  9290229 gagaaatgatattaaataatatgactacattatttctcttttaagttttatcatttatgtgtg 9290167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 17056012 - 17056071
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    |||||||||||| |  || ||||||||||||| |||||||||||||||||||||||||||    
T  17056012 aaatgatattaagtgttgagactaaattatttttcttttaaattttatcatttatgtgtg 17056071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 53718260 - 53718372
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtgc----ctaaatacttttgatttagggttgtgttcaacta 232  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||| | ||||||| |||    | |||||||||||||||   |||||| ||  |||    
T  53718260 gaaatgatattaagtgatgtgattaaattatttctcttttaaattttaccgtttatgtatgcatatccaaatacttttgatttgaagttgtgctcggcta 53718359  T
Q  233 agtatatcttgtt 245  Q
    ||||| |||||||    
T  53718360 agtatttcttgtt 53718372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 50116317 - 50116396
Alignment:
Q  154 tgtgactaaattatttctcttttaaattttatcatttatgtgtgcctaaatacttttgatttagggttgtgttcaactaag 234  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| | ||||  | ||||||| | ||||||| ||||||||    
T  50116317 tgtgattaaattatttctcttttaaattttatcatttttgtgtgtccaaat-ttattgatttggagttgtgtccaactaag 50116396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 53963384 - 53963418
Alignment:
Q  160 taaattatttctcttttaaattttatcatttatgt 194  Q
    |||||||||||||||||||||||||||||||||||    
T  53963384 taaattatttctcttttaaattttatcatttatgt 53963418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 13843162 - 13843223
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtgc 198  Q
    ||||| ||||||| | |||||||   |||||||||||||||||||||||||||||| |||||    
T  13843162 gaaataatattaaatgatgtgacattattatttctcttttaaattttatcatttatatgtgc 13843223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 25104706 - 25104784
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg--tgcctaaatacttttgattt 215  Q
    |||| ||||||| | || ||||||||||||||||||||| |||||||||||| |||||  | | ||||||||||||||||    
T  25104706 aaataatattaaataatatgactaaattatttctctttt-aattttatcattcatgtgtatacttaaatacttttgattt 25104784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 21505308 - 21505261
Alignment:
Q  131 aaatgagaaatgatattaatttatgtgactaaattatttctcttttaa 178  Q
    |||||| |||||||||||| | || |||||||||||||||||||||||    
T  21505308 aaatgataaatgatattaagtgatctgactaaattatttctcttttaa 21505261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 28184371 - 28184425
Alignment:
Q  143 atattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||| | |||||| || ||||||| |||||||||||||||||||| ||||||    
T  28184371 atattaactgatgtgattatattatttttcttttaaattttatcatttttgtgtg 28184425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 45652127 - 45652157
Alignment:
Q  160 taaattatttctcttttaaattttatcattt 190  Q
    |||||||||||||||||||||||||||||||    
T  45652127 taaattatttctcttttaaattttatcattt 45652157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 35298243 - 35298173
Alignment:
Q  165 tatttctcttttaaattttatcatttatgtgtgcctaaatacttttgatttagggttgtgttcaactaagtat 237  Q
    ||||| |||||||||||||| |||| ||||||  ||||||||||||||||| || |||||  |||| ||||||    
T  35298243 tatttttcttttaaattttaccattcatgtgt--ctaaatacttttgattttggattgtgcccaaccaagtat 35298173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11404675 - 11404736
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgt 196  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  11404675 gagaaatgatattaactgatgtgactaaattatttctcttttaaattttatcatctatgtgt 11404736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 14502772 - 14502697
Alignment:
Q  153 atgtgactaaattatttctcttttaaattttatcattta----tgtgtgcctaaatacttttgatttagggttgtg 224  Q
    |||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||  |||||||    
T  14502772 atgtgactaaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtg 14502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 2684935 - 2684827
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg----cctaaatacttttgatttagggttgtgttcaactaa 233  Q
    ||||||||| || | || ||||| ||||||||||||||||||| |||||||| |||||||     |||||||||||||||||||| |||||  |||||||    
T  2684935 aaatgatatcaagtgatttgacttaattatttctcttttaaatattatcattcatgtgtgtttatctaaatacttttgatttaggattgtgcccaactaa 2684836  T
Q  234 gtatatctt 242  Q
     ||| ||||    
T  2684835 atatttctt 2684827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 38844062 - 38844111
Alignment:
Q  146 ttaatttatgtgactaaattatttctcttttaaattttatcatttatgtg 195  Q
    |||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  38844062 ttaattgatgtgactaaattatttatcttttaaattttatcacttatgtg 38844111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 34768978 - 34768918
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||||||||| | ||||||||  ||||||  ||||||||||||||| |||||||||||    
T  34768978 gaaatgatattaagtgatgtgactttattattcatcttttaaattttattatttatgtgtg 34768918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 35621139 - 35621168
Alignment:
Q  165 tatttctcttttaaattttatcatttatgt 194  Q
    ||||||||||||||||||||||||||||||    
T  35621139 tatttctcttttaaattttatcatttatgt 35621168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 3954468 - 3954416
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcattt 190  Q
    |||| ||||||| | || ||||||||||| || ||||||||||||||||||||    
T  3954468 aaataatattaagtgatatgactaaattacttttcttttaaattttatcattt 3954416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 3053425 - 3053363
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    |||||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  3053425 gagaaattttattaagtgatgtgactaaattatttctcttttaaattttatcatttatgtgtg 3053363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 26457168 - 26457077
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatg--tgtgcctaaatacttttgatttagggttgtg 224  Q
    ||||||| |||| || | |||| |||||||||||||||||||||||||||| |||||||  |||| | |||| |||||||||| ||||||||    
T  26457168 gagaaataatatcaagtgatgtaactaaattatttctcttttaaattttattatttatgtatgtgtccaaatgcttttgatttggggttgtg 26457077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 32578251 - 32578308
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttat 192  Q
    |||||||||||| || |||| ||| |||||||||| ||||||||||||||||||||||    
T  32578251 gagaaatgatatcaagttatatgattaaattatttttcttttaaattttatcatttat 32578308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 2655235 - 2655292
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg 195  Q
    |||||||||||| | |||||| |||| ||||| |||||||||||||| ||||||||||    
T  2655235 aaatgatattaagtgatgtgattaaaatatttttcttttaaattttaccatttatgtg 2655292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 32943590 - 32943491
Alignment:
Q  142 gatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtgc----ctaaatacttttgatttagggttgtgttcaactaagtat 237  Q
    |||||||| | || ||||| |||||||| || |||||||||||| |||||||||||     | |||||||||||||||  |||||||| |||| ||||||    
T  32943590 gatattaagtgatatgacttaattatttttcatttaaattttattatttatgtgtgtgcgtccaaatacttttgatttgtggttgtgtccaaccaagtat 32943491  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 5501407 - 5501436
Alignment:
Q  160 taaattatttctcttttaaattttatcatt 189  Q
    ||||||||||||||||||||||||||||||    
T  5501407 taaattatttctcttttaaattttatcatt 5501436  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 24619415 - 24619315
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg--tgcctaaata-cttttgatttagggttgtgttcaactaag 234  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||  | ||||||||  |||| ||||||| |||||| ||||||||    
T  24619415 aaatgatattaagtgatgtaactaaattatttctcttttaaattttatcattcatgtgtattcctaaatattttttaatttaggattgtgtccaactaag 24619316  T
Q  235 t 235  Q
    |    
T  24619315 t 24619315  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 1350577 - 1350475
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgt--gtgcctaaatacttttgatttagggttgtgttcaactaag 234  Q
    |||| |||||||| | || ||| | |||||| |||| |||||||||||||||||||||  ||| ||||||||||||||||||||||| ||| ||| ||||    
T  1350577 gaaacgatattaagtgatatgatttaattatatctcatttaaattttatcatttatgtatgtgtctaaatacttttgatttagggttatgtccaattaag 1350478  T
Q  235 tat 237  Q
    |||    
T  1350477 tat 1350475  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 29956558 - 29956639
Alignment:
Q  153 atgtgactaaattatttctcttttaaattttatcatttatgtgtgcctaaatacttttgatttagggttgtgttcaactaagtat 237  Q
    ||||||||||||| ||| ||||||||||||||||   |||||||  ||||||||||||||||||| ||||||| |||| ||||||    
T  29956558 atgtgactaaattgtttttcttttaaattttatc---tatgtgtatctaaatacttttgatttagtgttgtgtccaacaaagtat 29956639  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 8438935 - 8439019
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg----tgcctaaatacttttgattt 215  Q
    |||| |||||||||| | |||||| ||||||||||||||||||| |||||||||| |||||    || |||||||||||||||||    
T  8438935 gagagatgatattaagtgatgtgattaaattatttctcttttaatttttatcattcatgtgaacatgtctaaatacttttgattt 8439019  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 45630255 - 45630195
Alignment:
Q  136 agaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgt 196  Q
    |||||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  45630255 agaaattatattaaattatgagactaaattatttctcttataaattttatcatttatgtgt 45630195  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 44397433 - 44397517
Alignment:
Q  135 gagaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtg----tgcctaaatacttttgattt 215  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| | |||    || |||||||||||||||||    
T  44397433 gagaaatcatattaagtgatgtgactaaattatttctcttttaaattttatcattcaagtgagtatgtctaaatacttttgattt 44397517  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 5968434 - 5968376
Alignment:
Q  136 agaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgt 194  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||||| ||||    
T  5968434 agaaatgatattaagtaatgtgattaaattatttctcttttaaattttatcattcatgt 5968376  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30785534 - 30785494
Alignment:
Q  157 gactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  30785534 gactaaattatttttcttttaaattttatcatttatgtgtg 30785494  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 5254985 - 5255022
Alignment:
Q  160 taaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5254985 taaattatttctcttttaaatttttacatttatgtgtg 5255022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 4036289 - 4036225
Alignment:
Q  153 atgtgactaaattatttctcttttaaattttatcatttatgtgtgcctaaatacttttgatttag 217  Q
    |||||| |||||||||||  ||||||||||||| ||| || |||| | ||||||| |||||||||    
T  4036289 atgtgattaaattatttcctttttaaattttataattcatatgtgtccaaatactattgatttag 4036225  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 48217304 - 48217358
Alignment:
Q  143 atattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  48217304 atattaaattatgagactaaattatttctcttataaattttatcatttatgtgtg 48217358  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 44058235 - 44058304
Alignment:
Q  157 gactaaattatttctcttttaaattttatcatttatgtgt--gcctaaatacttttgatttagggttgtg 224  Q
    |||||||||||||| |||||||||||||| ||| ||||||  ||||||||||||||||||| | ||||||    
T  44058235 gactaaattatttcccttttaaattttattattaatgtgtgcgcctaaatacttttgatttggagttgtg 44058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 49208286 - 49208252
Alignment:
Q  160 taaattatttctcttttaaattttatcatttatgt 194  Q
    |||||||||||||||||||||||||||||||||||    
T  49208286 taaattatttctcttttaaattttatcatttatgt 49208252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 24214133 - 24214075
Alignment:
Q  136 agaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgt 194  Q
    |||||||||||||| | ||||||||||||||||| | |||||||| |||| ||| ||||    
T  24214133 agaaatgatattaagtgatgtgactaaattattttttttttaaatgttatgattcatgt 24214075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 25724238 - 25724294
Alignment:
Q  141 tgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    ||||||||||| |||||||||  |||||| |||||||| |||| | |||||||||||    
T  25724238 tgatattaattgatgtgactattttatttatcttttaatttttttgatttatgtgtg 25724294  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 47896465 - 47896532
Alignment:
Q  160 taaattatttctcttttaaattttatcatttat--gtgtgcctaaatacttttgatttagggttgtgt 225  Q
    |||||||||||||||||||||||||||||| ||  |||||||| ||||||||| |||||| |||||||    
T  47896465 taaattatttctcttttaaattttatcattcattggtgtgccttaatactttttatttagagttgtgt 47896532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 51818475 - 51818416
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatgtgtg 197  Q
    |||| ||||||| | |||||| |||||||||| |||||||||||||||||||||||||||    
T  51818475 aaataatattaagtgatgtgattaaattatttttcttttaaattttatcatttatgtgtg 51818416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 47895833 - 47895895
Alignment:
Q  74 cacaaccctagataaaatttatttgaatacacatttgattgataaaatataaatgagaaatga 136  Q
    |||||||||| |||||||||||||||| |||||  ||||||||||||| |||| |||||||||    
T  47895833 cacaaccctaaataaaatttatttgaacacacacatgattgataaaatttaaaagagaaatga 47895895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 19279699 - 19279658
Alignment:
Q  153 atgtgactaaattatttctcttttaaattttatcatttatgt 194  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  19279699 atgtgattaaattatttctcttttaaatttaatcatttatgt 19279658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 48923474 - 48923531
Alignment:
Q  136 agaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatttatg 193  Q
    |||||| | ||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  48923474 agaaattaaattaaatgatgtgagtaaattatttctcttttatattttatcatttatg 48923531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 13601410 - 13601277
Alignment:
Q  76 caaccctagataaaatttatttgaatacacatttgattgataaaatataaatgagaaatgagaaatgatattaatttatgtgactaaattatttctcttt 175  Q
    |||||||| |||||||||||||| | |||||  ||| ||||||||| |||| ||        |||||||||||  | |||||| |||||||||||| |||    
T  13601410 caaccctaaataaaatttatttggacacacacatgactgataaaatttaaaaga--------aaatgatattaggtgatgtgagtaaattatttcttttt 13601319  T
Q  176 taaattttatcatttatgtgtg--cctaaatacttttgattt 215  Q
    |||||||||||||| |||||||  | ||||||||||| ||||    
T  13601318 taaattttatcattcatgtgtgtacttaaatactttttattt 13601277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 32886560 - 32886640
Alignment:
Q  137 gaaatgatattaatttatgtgactaaattatttctcttttaaattttatcatt--tatgtgtgcctaaatacttttgattt 215  Q
    ||||||||||||| | |||||||| || |||||||| ||||||||||||||||  | |||||| | |||||||||||||||    
T  32886560 gaaatgatattaagtgatgtgacttaactatttctcatttaaattttatcatttgtgtgtgtgtccaaatacttttgattt 32886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 26911233 - 26911315
Alignment:
Q  155 gtgactaaattatttctcttttaaattttatcattta--tgtgtgcctaaatacttttgatttagggttgtgttcaactaagt 235  Q
    |||||| |||||||| ||||||||||||||| |||||  |||||| | |||||||||||||||| | || |||| ||||||||    
T  26911233 gtgacttaattatttatcttttaaattttattatttatgtgtgtgtcaaaatacttttgatttaagtttatgtttaactaagt 26911315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 38611346 - 38611380
Alignment:
Q  160 taaattatttctcttttaaattttatcatttatgt 194  Q
    |||||||||||||||||||||||||||||||||||    
T  38611346 taaattatttctcttttaaattttatcatttatgt 38611380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 44985574 - 44985620
Alignment:
Q  138 aaatgatattaatttatgtgactaaattatttctcttttaaatttta 184  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||    
T  44985574 aaatgatattaactgatgtgactaaattatttttcttttaaatttta 44985620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 183
Target Start/End: Complemental strand, 22358938 - 22358908
Alignment:
Q  153 atgtgactaaattatttctcttttaaatttt 183  Q
    |||||||||||||||||||||||||||||||    
T  22358938 atgtgactaaattatttctcttttaaatttt 22358908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 43449629 - 43449665
Alignment:
Q  156 tgactaaattatttctcttttaaattttatcatttat 192  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43449629 tgactaaattatttctattttaaattttattatttat 43449665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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