View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_9 (Length: 516)
Name: NF1602_low_9
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 34044601 - 34045092
Alignment:
| Q |
9 |
gaagaatatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgtggcagtaccccaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34044601 |
gaagaaaatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgcggcagtaccccaa |
34044700 |
T |
|
| Q |
109 |
gaggaaattaaagaagctggaacatccaaagaagatgaagacgaagagtggactgggttgatcaagcgagtacaggacatgggaaaggggaaggcgcggg |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
34044701 |
gaggaaattaaagaagctggaacatccaaagaaaatgaagacgaagagtggactgggttgatcaagcaagtacaggacatgagaaaggggaaggcgcggg |
34044800 |
T |
|
| Q |
209 |
tgcaggtgttggtgcaggcggaggagttgcctgatgatgaagtaacggttgcaattggcaacaaggtaatggtagccgatacatctgataaaaaagatgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34044801 |
tgcaggtgttggtgcaggcggaggagttgcctgatgatgaagtaacggttgcaagtggcaacgaggtaatggtagccgatacatctgataaaaaagatgt |
34044900 |
T |
|
| Q |
309 |
agaagaaacaagtctggccaagggcaagggaaaggcagtggatgttgatgatgataaagccagggttgaggatataatccaaagagcattggcaaaggag |
408 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34044901 |
agaagaaacaagtctgcccaagggcaagggcaaggcagtggatgttgatgatgataaagccagggttgaggatataatccaaagagcattggtaaaggag |
34045000 |
T |
|
| Q |
409 |
ccacggatggagagatcgatttcagagattgcagaggttgtagtaccaaagaagctgatgaactttgagctgaaatggcccactgatgttcc |
500 |
Q |
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| T |
34045001 |
ccacggatggagagatcaatttcagagattgcagaggttgtagtaccaaagaagctgatgaactttgagctgaaatggcccactgatgttcc |
34045092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 4044991 - 4044650
Alignment:
| Q |
9 |
gaagaatatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgtggcagtaccccaa |
108 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| || || |
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| T |
4044991 |
gaagaaaatggttgatctttgcaacagattgaacatccagattgagagcactgaatcaggaactcgctccacctcaagtaaagttacggcagtccctgaa |
4044892 |
T |
|
| Q |
109 |
gaggaaattaaagaagctggaacatccaaagaagatgaagacgaagagtggactgggttgatcaagcgagtacaggacatgggaaaggggaaggcgcggg |
208 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
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| T |
4044891 |
gaggaaatcaaagaagctggaacatccgaagaagatgaagacgaagagtggactgggttgatcaagcaagtacaggacatgggaaagaggaaggctcggg |
4044792 |
T |
|
| Q |
209 |
tgcaggtgttggtgcaggcggaggagttgcctgatgatgaagtaacggttgcaattggcaacaaggtaatggtagccgatacatctgataaaaaagatgt |
308 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||| | | |||||| ||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
4044791 |
tgcaggtgttggtgcaagcggaggagttgcttgatgatgaagttaggcttgcaagtggcaacgaggtaatggtagtcgatacatctgataaaaaagatgt |
4044692 |
T |
|
| Q |
309 |
agaagaaacaagtctggccaagggcaagggaaaggcagtgga |
350 |
Q |
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| |||||||||||||||||||||| ||||| |||||| |||| |
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| T |
4044691 |
aaaagaaacaagtctggccaagggaaagggcaaggcaatgga |
4044650 |
T |
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