View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603-INSERTION-2 (Length: 565)
Name: NF1603-INSERTION-2
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603-INSERTION-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 7 - 565
Target Start/End: Original strand, 3084311 - 3084869
Alignment:
| Q |
7 |
aggaatgtcagataatccaatgaacgctgtctatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagc |
106 |
Q |
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| T |
3084311 |
aggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagc |
3084410 |
T |
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| Q |
107 |
tacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaat |
206 |
Q |
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| T |
3084411 |
tacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaatttgtgttccatctaaat |
3084510 |
T |
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| Q |
207 |
caattcttacaaactagtgcgatatgttttcgacttatgaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaag |
306 |
Q |
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| T |
3084511 |
caattcttacaaactagtgcgatatgtcttcgacttattaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaag |
3084610 |
T |
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| Q |
307 |
ctttcaaaacaacatgcaattacacttgctaagtcacacccaactcaatttattatgtaaaagttaaaacccaaaccaaataaacatcaatatggcctag |
406 |
Q |
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| T |
3084611 |
ctttcaaaacaacatgcaattgcacttgctaagttacacccaactcaatttattatgtaaaagttaaaatccaaaccaaataaacatcaatatggcctag |
3084710 |
T |
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| Q |
407 |
ctaacaaataacaatattacactatttttgggaccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaa |
506 |
Q |
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| T |
3084711 |
ctaacaaataacaatattacactatttttgggaccgactctcctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaa |
3084810 |
T |
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| Q |
507 |
attgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgt |
565 |
Q |
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| T |
3084811 |
attgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgt |
3084869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 3093191 - 3093455
Alignment:
| Q |
7 |
aggaatgtcagataatccaatgaacgctgtctatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagc |
106 |
Q |
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||||||||||||||| ||||||||| |||| |||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||| ||| |||||| |
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| T |
3093191 |
aggaatgtcagataacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagc |
3093290 |
T |
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| Q |
107 |
tacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaat |
206 |
Q |
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| T |
3093291 |
tatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatctaaat |
3093390 |
T |
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| Q |
207 |
caattcttacaaactagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
270 |
Q |
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| T |
3093391 |
caattcttacaaactagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 538
Target Start/End: Original strand, 3093623 - 3093718
Alignment:
| Q |
440 |
ccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatatttt |
538 |
Q |
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| T |
3093623 |
ccgactcccctgcaattaaggaatccatgcattcatgcagtcggac---ggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatatttt |
3093718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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