View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1603-INSERTION-4 (Length: 640)

Name: NF1603-INSERTION-4
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1603-INSERTION-4
NF1603-INSERTION-4
[»] chr3 (1 HSPs)
chr3 (8-640)||(42241599-42242233)


Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Original strand, 42241599 - 42242233
Alignment:
Q  8 ctcataaggattttccaaatcaaaacttagcatctaattctttgagatatgtgaattcatgtaagagattaacctctttcaatagatatactttcatatg 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42241599 ctcataaggattttccaaatcaaaagttagcatctaattctttgagatatgtgaattcatgtaagagattaacctctttcaatagatatactttcatatg 42241698  T
Q  108 caccgactatatatcgaactcacaataaaatttacatgaaattttcttatcatctaaagtcatcccatgcaattatcattcccatcactgccaatataat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42241699 caccgactatatatcgaactcacaataaaatttacatgaaattttcttatcatctaaagtcatcccatgcagttatcattcccatcactgccaatataat 42241798  T
Q  208 atttatccagtgttaggtttattgtacattaggaaattaggccacatgcatgatagattattgagtaatcacttgcataaatatatcaatatacttacag 307  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42241799 atttatccagtgttaggtttattgtaccttaggaaattaggccacatgcatgatacattattgagtaatcacttgcataaatatatcaatatacttacag 42241898  T
Q  308 taattcacatgaaaacaattaccagtatcttatggtgtactaccgaaaaatctccatgtttttgaaagtacaaaattagtgannnnnnnggatgtgcata 407  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  42241899 taattcacatgaaaacaattaccagtatgttatggtgtactaccgaaaaatctccatgtttttgaaagtacaaaattagtgatttttttggatgtgcata 42241998  T
Q  408 ccaaatttatgttgggtgggaaggta--atactaggaataaaggggcattggacccatgtgtttgtcttttcaattaggtctccttnnnnnnnnnnnnnn 505  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  42241999 ccaaatttatgttgggtgggaaggtaggatactaggaataaaggggcattggacccatgtgtttgtcttttcaattaggtctccttaaaaaataaaaata 42242098  T
Q  506 nnttaggtctcccgccagaggcatccacaatccattcaatctagcaccgtggaccatactttttattgcttgcaaaattcaaataattccacatgtttgt 605  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42242099 aattaggtctcccgccagaggcatccacaatccattcaatctagcaccgtggtccatactttttattgcttgcaaaattcaaataattccacatgtttgt 42242198  T
Q  606 cgcaaagattcaattaatatgatttcaatgtaacc 640  Q
    |||||||||||||||||||||||||||||||||||    
T  42242199 cgcaaagattcaattaatatgatttcaatgtaacc 42242233  T

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