View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16030_high_2 (Length: 414)
Name: NF16030_high_2
Description: NF16030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16030_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 30315288 - 30314896
Alignment:
| Q |
1 |
tgttggtggcaaagatggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacatagatttcgagtcaatgacactctccgtgagtcc |
100 |
Q |
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| T |
30315288 |
tgttggtggcaaagatggttgggtcgtgaatccttctgaagactacaatcagtgggctcgaacacataggtttcgagtcaatgacactctccgtgagtcc |
30315189 |
T |
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| Q |
101 |
aatattcattgttaatccccaacattacaatcattttacgagtattatttattattatatactcttttaataacttgtaacgttgttattattttgaaaa |
200 |
Q |
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| T |
30315188 |
aat--tcattgttaatcctcaacattacaatcattttacgagtattatttattattatatactcttttaataacttgtaacgttgtttttattttgaaaa |
30315091 |
T |
|
| Q |
201 |
atgctgcagatttcaagtacgttaaagggaatgattcggttcttgtggtgaagaaagaagactatgattcttgcaacaccaacaatccaaaacaaaaatt |
300 |
Q |
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| T |
30315090 |
atgttgcagatttcaagtacgttaaagggaatgattcggttcttgtggtgaagaaagaagactatgattcttgcaacaccaacaatccaaaacaaaaatt |
30314991 |
T |
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| Q |
301 |
ggacaatggtaattccaagtttaagctgagtgactcgggtttctattatttcatcagtggcaatgctgacaactgcaagcatgatgaaaagatga |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314990 |
ggacaatggtaattccaagtttaagctgagtgactcgggtttctattatttcatcagtggcaatgctgacaactgcaagcatgatgaaaagatga |
30314896 |
T |
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