View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16030_high_3 (Length: 222)
Name: NF16030_high_3
Description: NF16030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16030_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 39173234 - 39173044
Alignment:
| Q |
16 |
gaagacgaattgaatccaagctagaggcatatatgcattattaatgagtgatccgttaaagactaccggagtaaaactcaattgtgttaataaaggtcaa |
115 |
Q |
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| T |
39173234 |
gaagacgaattgaatccaagctagaggcatatatgcattattaatgagtgatccgttaaagactaccggagtaaaactcaattgtgtcaataaaggtcaa |
39173135 |
T |
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| Q |
116 |
gaagttaatggtttatagtcaacaaaagaaaattgtccagctataagaatgctaaaagtgaaactattcactgttatcatgcgtttcaagg |
206 |
Q |
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| T |
39173134 |
gaagttaatggtttatagtcaacaaaagaaaattgtccagctataagaatgctaaaagtgaaactattcattgttatcattcgtttcaagg |
39173044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 39177103 - 39176945
Alignment:
| Q |
47 |
tatgcattattaatgagtgatccgttaaagactaccggagtaaaactcaattgtgttaataaaggtcaagaagttaatggtttatagtcaacaaaagaaa |
146 |
Q |
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| T |
39177103 |
tatgcattattaatgagtgatccgttaaagacttc-ggagtaaaactcaacggtgtcaataaagttcaagaagttaatagaatatagtcaacaaaagaaa |
39177005 |
T |
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| Q |
147 |
attgtccagctataagaatgctaaaagtgaaactattcactgttatcatgcgtttcaagg |
206 |
Q |
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| T |
39177004 |
attgtccagctataagaatgttaaaagtaatagtattcattgttatcatgtgtttcaagg |
39176945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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