View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16030_high_4 (Length: 212)
Name: NF16030_high_4
Description: NF16030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16030_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 42933364 - 42933543
Alignment:
| Q |
19 |
gtttggtgttggtaaaatcaccaacatgatcaagaatgttccacctcatcttagagatcatactatgagttctattatttttcaatctgatatgcgtgct |
118 |
Q |
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| T |
42933364 |
gtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatcataccatgagttctattatttttcaatctgatatgcgtgct |
42933463 |
T |
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| Q |
119 |
atggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatct |
198 |
Q |
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| T |
42933464 |
atggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatct |
42933543 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 5747366 - 5747292
Alignment:
| Q |
95 |
atttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaa |
169 |
Q |
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| T |
5747366 |
atttttcaatctgatatgcgggctaatgatcctgttggtggttgttataaatatattcaagatcttcaagctcaa |
5747292 |
T |
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