View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16030_low_2 (Length: 476)
Name: NF16030_low_2
Description: NF16030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16030_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 206 - 398
Target Start/End: Complemental strand, 2946927 - 2946735
Alignment:
| Q |
206 |
ccccctcattaattaaaatatattttcctatttgggtttttgatcctattgaaaaatgcactaatttcctaaatcaaaagttggtggttttggaagcatt |
305 |
Q |
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| T |
2946927 |
ccccctcattaattaaaatatattttcctatttgggtttttgatcctattgaaaaatgccctaatttcctaaatcaaatgttggtggttttggaagcatt |
2946828 |
T |
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| Q |
306 |
taacaagctttgtgcttgaacttaatgcatagaaaaaaggagtatttatgtaagaaagctttatgcatatccataatttaaaataagaatgta |
398 |
Q |
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| T |
2946827 |
taacaagctttgtgcttgaacttaatgcatagaaaaaaggagtatttatgtaagaaagctttatgcatatccatattttaaaataagaatgta |
2946735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 2947112 - 2947002
Alignment:
| Q |
13 |
gaaaagactcttctcaatgttttctattctcctaaaagtatcattgtctttttaggtggttatgactaaacttttcaataatgtagcaaattatgaccga |
112 |
Q |
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| T |
2947112 |
gaaaagactcttcccaatgttttctattctcctaaaagtatcattgtctttttaggtggttatgactaaacttttcaataatgtggcaaattatgaccga |
2947013 |
T |
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| Q |
113 |
ttgacattgtg |
123 |
Q |
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| T |
2947012 |
ttgacattgtg |
2947002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 3353577 - 3353690
Alignment:
| Q |
13 |
gaaaagactcttctcaatgttttctattctcctaaaagtatcattgt--ctttttaggtggttatgactaaacttttcaataatgtagcaaattatgacc |
110 |
Q |
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| T |
3353577 |
gaaaagactcttcctaatgttttctattctcctaaaagtttcattatggcttttaaggttgttatgagtaaacttttcaatgatgtggcaaattatgacc |
3353676 |
T |
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| Q |
111 |
gattgacattgtga |
124 |
Q |
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| T |
3353677 |
gattgacattgtga |
3353690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 388
Target Start/End: Original strand, 3353801 - 3353969
Alignment:
| Q |
224 |
tatattttcctatttgggtttttgatcctattgaaaaatgcac--taat-----ttcctaaatcaaaagttggtggttttggaagcatttaacaagcttt |
316 |
Q |
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| T |
3353801 |
tatattttcctatttgggttttt-atcctattgaaagatacaccttagtgctttttcctgaatcaaatgttgctggttttggaagcatttaacaagcatt |
3353899 |
T |
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| Q |
317 |
gtgcttgaacttaatgcatagaaaaaaggagtatttatgtaagaaagctttatgcatatccataatttaaaa |
388 |
Q |
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| T |
3353900 |
gtgattgagcttaatgcatag-aaaaaggagta-ttacctaagaaagctttatgcacatcgataatttaaaa |
3353969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 462
Target Start/End: Original strand, 3354135 - 3354185
Alignment:
| Q |
412 |
ttatccatacaagttttttcactgtgcttttccagttttattgctcctttg |
462 |
Q |
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||||||||||||||||||||||||||||| |||| | ||||| || ||||| |
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| T |
3354135 |
ttatccatacaagttttttcactgtgcttgtccaatgttattactgctttg |
3354185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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