View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16031_high_6 (Length: 240)
Name: NF16031_high_6
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 8135404 - 8135616
Alignment:
| Q |
13 |
gaagatatgtaggagcaagagaccactcttatcaagcacaataaaaataaaatatttttcctctctctttataaaactacattttcaatcaaacttgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8135404 |
gaagatatgtaggagcaagagaccactcttatcaagcacaataataataaaatatttttcctctctctttaaaaaactacattttcaatcaaacttgtat |
8135503 |
T |
|
| Q |
113 |
tttcatttgcacttaataacggaggagaaaat-aaatgttataaagttagccaaatatttcacaattaattagagctaatcattttcttaaatggatgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8135504 |
tttcatttgcacttaataacggaggagaaaataaaatgttataaagttagccaaatatttcacaattaattagagctaatcattttcttaaatggatgtt |
8135603 |
T |
|
| Q |
212 |
gtagggtattaat |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8135604 |
gtagggtattaat |
8135616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 21779101 - 21779142
Alignment:
| Q |
14 |
aagatatgtaggagcaagagaccactcttatcaagcacaata |
55 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
21779101 |
aagatatgtaggagcaagcgaccactcttgtcaagaacaata |
21779142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University