View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16031_low_1 (Length: 520)
Name: NF16031_low_1
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Original strand, 46793368 - 46793856
Alignment:
| Q |
16 |
aaaattataatgactctttgtttgataacgagtttgggaactaagagcaatcaaagagaaaatcaacagaatttggaggaacaattctttataaaacgac |
115 |
Q |
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| T |
46793368 |
aaaattataatgactctttgtttgataacgagtttgggaactaagagcaatcaaagagaaaatcaacagaatttggaggaacaattctttgtaaaacgac |
46793467 |
T |
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| Q |
116 |
attttcatgaaagaaaatgtgttcaacattgctcttcaatgctattgcgaataattttcttgggcttgaaagcatttgtgttgaaggggttttatatttg |
215 |
Q |
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| T |
46793468 |
attttcatgaaagaaaatgtgttcaacattgctcttcaatgctattgcgaataattttcttgggcttgaaagcatttgtgttgaaggggttttatatttg |
46793567 |
T |
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| Q |
216 |
aagtgaagaggcttaattagtagaagtggatttaatttcgtgcttccatcttcaaattttggtgcagcctcactgtcacacttattaagataaaacaaca |
315 |
Q |
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| T |
46793568 |
aagtgaagaggcttaattagtagaagtggatttaatttcgtgcttccatcttcaaattttggtgcagcctcactgtcacacttattaagataaaacaaca |
46793667 |
T |
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| Q |
316 |
ttttccttcgaaaaagataaaacaccattgtcaacttaggtagacatttactcgctaggctgatgatataagtataggaaggaaatttaagagtggttca |
415 |
Q |
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| T |
46793668 |
ttttccttcgaaaaagataaaacaccattgtcaacttaggtagacatttactcgctaggctgatgatataagtatagcaaggaaatttaagagtggttca |
46793767 |
T |
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| Q |
416 |
tcaagtaattatgagcttagcatgaaaatagcgtatagaccctaaaagcactgcaagaaataattaaaagtat-cgtgtgaggccattt |
503 |
Q |
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| T |
46793768 |
tcaagtaattatgagcttagcatgaaaatagcgtatagaccctaaaagcactgcaagaaataattaaaagtatacgtgtgaggccattt |
46793856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 46785037 - 46785121
Alignment:
| Q |
44 |
cgagtttgggaactaagagcaatcaaagagaaaatcaacagaatttggaggaacaattctttataaaacgacattttcatgaaagaaa |
131 |
Q |
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| T |
46785037 |
cgagtttgggaactaagagtaatgaaagaataaatcaacaaagtttgga---acaattctttgtaaaacgacattttcatgaaagaaa |
46785121 |
T |
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