View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16031_low_12 (Length: 237)
Name: NF16031_low_12
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 34880638 - 34880763
Alignment:
| Q |
1 |
aaccatagttggcataaccatctctatatatgtggttattgcattgtacatactgtatctccacaacttctccattcaatacaatctacatatttcagtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34880638 |
aaccatagttggcataaccatctctatatatatggttattgcattgtacatactgtatctccacaacttctccattcaatacaatttacatatttcagtc |
34880737 |
T |
|
| Q |
101 |
atactcattcttc-ttctaagttgaa |
125 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
34880738 |
atactcattcttctttctaagttgaa |
34880763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 22310963 - 22310923
Alignment:
| Q |
104 |
ctcattcttcttctaagttgaaactcacctcacattagtgt |
144 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
22310963 |
ctcattcttcttctaagtggcaattcacctcacattagtgt |
22310923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 30477544 - 30477461
Alignment:
| Q |
4 |
catagttggcataaccatctctatatatgtggttattgcattgtacatactgtatctccacaa-cttctccattcaatacaatctaca |
90 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||| |||| ||||| |||||||||||| |||| |
|
|
| T |
30477544 |
catagttagcataatcatctctatatatg--gttattgcattgtacatatagtatctctacaatcttct--attcaatacaatttaca |
30477461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 17070705 - 17070745
Alignment:
| Q |
7 |
agttggcataaccatctctatatatgtggttattgcattgt |
47 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
17070705 |
agttagcataatcatctctatatatatggttattgcattgt |
17070745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 17577567 - 17577527
Alignment:
| Q |
7 |
agttggcataaccatctctatatatgtggttattgcattgt |
47 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
17577567 |
agttagcataatcatctctatatatatggttattgcattgt |
17577527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University