View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16031_low_3 (Length: 356)

Name: NF16031_low_3
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16031_low_3
NF16031_low_3
[»] chr5 (5 HSPs)
chr5 (13-243)||(33531155-33531380)
chr5 (248-317)||(33529082-33529151)
chr5 (130-232)||(23419346-23419446)
chr5 (127-243)||(14125931-14126054)
chr5 (165-243)||(4873388-4873467)
[»] chr2 (6 HSPs)
chr2 (13-243)||(16869967-16870192)
chr2 (145-243)||(43994439-43994538)
chr2 (248-317)||(16872196-16872265)
chr2 (165-243)||(15736143-15736222)
chr2 (126-243)||(36006090-36006210)
chr2 (128-218)||(32407138-32407228)
[»] chr1 (7 HSPs)
chr1 (128-243)||(12268060-12268176)
chr1 (148-218)||(52575692-52575762)
chr1 (128-243)||(27740661-27740780)
chr1 (145-201)||(40812791-40812847)
chr1 (149-243)||(29636418-29636512)
chr1 (154-218)||(40498546-40498610)
chr1 (128-199)||(4248696-4248767)
[»] chr8 (3 HSPs)
chr8 (165-243)||(18699101-18699180)
chr8 (148-243)||(41005241-41005341)
chr8 (165-240)||(27869763-27869839)
[»] chr6 (2 HSPs)
chr6 (145-224)||(6606260-6606340)
chr6 (145-232)||(16317384-16317470)
[»] chr7 (5 HSPs)
chr7 (127-230)||(9906961-9907064)
chr7 (153-240)||(2473096-2473184)
chr7 (134-230)||(15613716-15613812)
chr7 (154-243)||(31115385-31115474)
chr7 (148-239)||(3105503-3105594)
[»] chr4 (4 HSPs)
chr4 (145-216)||(23125575-23125646)
chr4 (154-215)||(36233997-36234055)
chr4 (161-232)||(48087402-48087472)
chr4 (157-213)||(5419055-5419111)
[»] chr3 (1 HSPs)
chr3 (153-231)||(1765861-1765942)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 33531380 - 33531155
Alignment:
Q  13 aatattgctttctttcataatctagggttgtaatatttgctatggataaatctaggataatactgccgccaaaatcaggcatgtggactattgaacatgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  33531380 aatattgctttctttcataatctagggttgtaatatttgctatggataaatctaggataatactgctgccaaaatcaggcatgtggaccattgaacatgt 33531281  T
Q  113 tcttcggtactttacttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaat 212  Q
    ||||||||     ||||||| |||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33531280 tcttcggt-----acttagatcatctacaacatagcactccattttgggtgcttaagtgggtcatccatgtacacatcatctatttttttaattttcaat 33531186  T
Q  213 gatattgtttaataagcaccaatctctccaa 243  Q
    ||||||  |||||||||||||||||||||||    
T  33531185 gatattacttaataagcaccaatctctccaa 33531155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 33529151 - 33529082
Alignment:
Q  248 attgtactagttgtaagcacaatagtatctaccaaaccaacaattttcttaacaagggtatgagtgtttt 317  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||||    
T  33529151 attgtactagtggtaagcacaatagtatatacccaaccaacaatttgcttaacaagggtctgagtgtttt 33529082  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 23419446 - 23419346
Alignment:
Q  130 agaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagc 229  Q
    |||||||||||| | ||||| ||||||| || ||||| |||||||||| ||||||||| ||||||||||| |||| ||| |||||||||  |||||||||    
T  23419446 agaccatctacagcagagcatttcattt-ggatgctttagtgggtcatgcatgtacacgtcatctattttataaa-tttaaatgatattacttaataagc 23419349  T
Q  230 acc 232  Q
    |||    
T  23419348 acc 23419346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 14125931 - 14126054
Alignment:
Q  127 cttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatca---tctatttttt---aaattttcaatgatattgt 220  Q
    ||||||||||||||| |  |||| | | ||||| ||| ||||||||||||| |||||||||||||   | ||||||||   |||||||||||||||||      
T  14125931 cttagaccatctacaacaaagcaatccgttttgagtgtttaagtgggtcatacatgtacacatcattttttattttttttaaaattttcaatgatattac 14126030  T
Q  221 ttaataagca-ccaatctctccaa 243  Q
    ||||||||||  ||||||||||||    
T  14126031 ttaataagcagtcaatctctccaa 14126054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 4873388 - 4873467
Alignment:
Q  165 ttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagcacc-aatctctccaa 243  Q
    |||| ||| |||| ||| |||||||||| |||||||| ||||||||||||||||  ||| ||| |||| |||||||||||    
T  4873388 ttaaatggatcatgcatatacacatcatatatttttttaattttcaatgatattacttactaatcacctaatctctccaa 4873467  T

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Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 16869967 - 16870192
Alignment:
Q  13 aatattgctttctttcataatctagggttgtaatatttgctatggataaatctaggataatactgccgccaaaatcaggcatgtggactattgaacatgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  16869967 aatattgctttctttcataatctagggttgtaatatttgctatggataaatctaggataatactgctgccaaaatcaggcatgtggaccattgaacatgt 16870066  T
Q  113 tcttcggtactttacttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaat 212  Q
    |||||||     |||||||| |||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16870067 tcttcgg-----tacttagatcatctacaacatagcactccattttgggtgcttaagtgggtcatccatgtacacatcatctatttttttaattttcaat 16870161  T
Q  213 gatattgtttaataagcaccaatctctccaa 243  Q
    ||||||  |||||||||||||||||||||||    
T  16870162 gatattacttaataagcaccaatctctccaa 16870192  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 43994538 - 43994439
Alignment:
Q  145 gagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagcac-caatctctccaa 243  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||  ||||||| ||| ||||||||||||    
T  43994538 gagcactccattttgggtgcttaagtgggccatgcatgtacacttcatctatttttttaattttcaatgattttacttaataaacactcaatctctccaa 43994439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 16872196 - 16872265
Alignment:
Q  248 attgtactagttgtaagcacaatagtatctaccaaaccaacaattttcttaacaagggtatgagtgtttt 317  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||||    
T  16872196 attgtactagtggtaagcacaatagtatatacccaaccaacaatttgcttaacaagggtctgagtgtttt 16872265  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 15736222 - 15736143
Alignment:
Q  165 ttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctctccaa 243  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||  ||||||| || |||||||||||||    
T  15736222 ttaagtgggtcatgcatatacacatcatctatttttttaattttcaatgatattacttaataaacatccaatctctccaa 15736143  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 36006210 - 36006090
Alignment:
Q  126 acttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatca-tctatttt-ttaaattttcaatgatattgttta 223  Q
    ||||||||||||| || |  |||||| ||||||||||| ||||||||| |||  |||||||||||| | |||||| ||  ||||||||||||||| ||||    
T  36006210 acttagaccatctgcaacatagcactccattttgggtgtttaagtgggccatgaatgtacacatcattttattttattttattttcaatgatattattta 36006111  T
Q  224 ataagca-ccaatctctccaa 243  Q
    |||||||  ||||||||||||    
T  36006110 ataagcattcaatctctccaa 36006090  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 32407228 - 32407138
Alignment:
Q  128 ttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatatt 218  Q
    ||||||||||||||   || |||| ||||||| ||| |||||| ||||||  ||||||| |||||||||||||| |||||| |||||||||    
T  32407228 ttagaccatctacaatagatcactccattttgagtgtttaagttggtcatgtatgtacaaatcatctatttttttaatttttaatgatatt 32407138  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 12268060 - 12268176
Alignment:
Q  128 ttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataa 227  Q
    ||||||||||| || | ||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||  |||||||    
T  12268060 ttagaccatctgcaacagagaactccattttgggagcttaagtgggtcatgcatgtacacatcatctatttttttaattttcaattatattacttaataa 12268159  T
Q  228 gcac-caatctctccaa 243  Q
    |||| ||||||||||||    
T  12268160 gcactcaatctctccaa 12268176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 52575762 - 52575692
Alignment:
Q  148 cacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatatt 218  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52575762 cactccattttgggtgcttaagtgggccatccatgtacacatcatctatttttttaattttcaatgatatt 52575692  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 27740780 - 27740661
Alignment:
Q  128 ttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctatttttta---aattttcaatgatattgtttaa 224  Q
    ||||||||||||||   |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||   | ||||||| ||||||  ||||    
T  27740780 ttagaccatctacaatagagcacttcatttttggtgcttaagtgggtcatgcatgtacacatcatctaatttttatttatttttcaacgatattacttaa 27740681  T
Q  225 taagca-ccaatctctccaa 243  Q
    |||||| | |||||||||||    
T  27740680 taagcatctaatctctccaa 27740661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 40812791 - 40812847
Alignment:
Q  145 gagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctatttttt 201  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  40812791 gagcacttcattttgagtgcttaagtgggtcatgcatgtacacatcatctatttttt 40812847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 29636512 - 29636418
Alignment:
Q  149 acttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctctccaa 243  Q
    |||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||| || |||  |||||||| | |||||||||||||    
T  29636512 acttcattttggatgcttaagtgggtcatgcatgtacacatcatatatttttt-aattttcaacgaaattacttaataagtatccaatctctccaa 29636418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 40498546 - 40498610
Alignment:
Q  154 attttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatatt 218  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||  |||||||||| |||||    
T  40498546 attttggatgcttaagtgggtcatgcatgtacacatcatttatttttctaattttcaattatatt 40498610  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 4248696 - 4248767
Alignment:
Q  128 ttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctatttt 199  Q
    |||||||||||||| |  |||||||||||||  ||||||||||||  ||| |||||||| ||||||||||||    
T  4248696 ttagaccatctacaacatagcacttcattttaagtgcttaagtggaccatgcatgtacaaatcatctatttt 4248767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 18699180 - 18699101
Alignment:
Q  165 ttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctctccaa 243  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||  ||||||| || |||||||||||||    
T  18699180 ttaagtgggtcatgcatatacacatcatctatttttttaattttcaatgatattacttaataaacatccaatctctccaa 18699101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 41005341 - 41005241
Alignment:
Q  148 cacttcattttgggtgcttaagtgggtcatccatgtacacatcatctatttttta----aattttcaatgatattgtttaataagca-ccaatctctcca 242  Q
    |||| ||||||  |||||||||||||  || |||||||||||||||| ||||||     ||||||||||||||||  |||||||||| ||||||||||||    
T  41005341 cactccattttttgtgcttaagtgggaaatgcatgtacacatcatctttttttttttttaattttcaatgatatttcttaataagcatccaatctctcca 41005242  T
Q  243 a 243  Q
    |    
T  41005241 a 41005241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 27869839 - 27869763
Alignment:
Q  165 ttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagcac-caatctctc 240  Q
    ||||||||||| | ||||||||  |||| |||||| |||||||| |||| || | |||||||||||| |||||||||    
T  27869839 ttaagtgggtcttacatgtacatgtcatttattttataaatttttaatgttaatatttaataagcactcaatctctc 27869763  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 6606340 - 6606260
Alignment:
Q  145 gagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctatt-ttttaaattttcaatgatattgtttaa 224  Q
    |||||||  |||||||||| ||||||||  ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  6606340 gagcactctattttgggtgtttaagtggaccatccatgtacacatcatctattttttttaattttcaatgatattatttaa 6606260  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 16317470 - 16317384
Alignment:
Q  145 gagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagcacc 232  Q
    ||||||| ||||||||||||||||||||  | | ||||||| ||||||||||||||| || | ||||| ||||| |||| ||||||||    
T  16317470 gagcactccattttgggtgcttaagtggaccgtgcatgtacgcatcatctatttttttaa-tatcaatcatattatttactaagcacc 16317384  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 9906961 - 9907064
Alignment:
Q  127 cttagaccatctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaata 226  Q
    |||||||||||| || | ||||||| |||||| ||||||||| | || |||  |||| |||||||||||||||||  |||||||||||||||  ||||||    
T  9906961 cttagaccatctgcaacagagcactccattttaggtgcttaaataggccatgtatgttcacatcatctattttttttattttcaatgatattacttaata 9907060  T
Q  227 agca 230  Q
    ||||    
T  9907061 agca 9907064  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 2473184 - 2473096
Alignment:
Q  153 cattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctctc 240  Q
    |||||| |||||||||||||  ||| || ||||||||| |||||||||| ||||||||||||||||  |||| ||||| ||||||||||    
T  2473184 cattttaggtgcttaagtggaccatgcaagtacacatcctctatttttttaattttcaatgatattacttaacaagcatccaatctctc 2473096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 15613716 - 15613812
Alignment:
Q  134 catctacatcggagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca 230  Q
    |||||||| | |||||||  |||||  ||| ||||||||||| | ||||||||  ||||||||||||| ||||||||||||||||  ||||||||||    
T  15613716 catctacaacagagcactctattttaagtgtttaagtgggtcgtgcatgtacatgtcatctatttttttaattttcaatgatattacttaataagca 15613812  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 31115474 - 31115385
Alignment:
Q  154 attttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctctccaa 243  Q
    ||||| ||| |||||||| ||||| ||||||||||| ||||||||| | ||||||||||||||||  ||||||| || ||||| |||||||    
T  31115474 attttaggtacttaagtgagtcatgcatgtacacataatctattttat-aattttcaatgatattacttaataaacatccaatttctccaa 31115385  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 3105594 - 3105503
Alignment:
Q  148 cacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagca-ccaatctct 239  Q
    |||||||||||||||  |||||||||| || || | || ||||| ||||||| | ||||||||||||||||  ||||||| || |||||||||    
T  3105594 cacttcattttgggtatttaagtgggttatgcacgcactcatcacctattttat-aattttcaatgatattacttaataaacatccaatctct 3105503  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 23125575 - 23125646
Alignment:
Q  145 gagcacttcattttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgata 216  Q
    ||||||| |||||||| ||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||||||    
T  23125575 gagcactccattttggatgcataagtgggacatgcatgtacacataatctatttttttaattttcaatgata 23125646  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 36234055 - 36233997
Alignment:
Q  154 attttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgat 215  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||   ||||||||||||    
T  36234055 attttgggtgcttaagtgggttatgcatgtacacatcatctattttt---attttcaatgat 36233997  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 48087472 - 48087402
Alignment:
Q  161 gtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatgatattgtttaataagcacc 232  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||| |  ||||||||||||    
T  48087472 gtgcttaagtgggtcatccatgtacacatcatctacttttt-aattatcaataatactacttaataagcacc 48087402  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 5419111 - 5419055
Alignment:
Q  157 ttgggtgcttaagtgggtcatccatgtacacatcatctattttttaaattttcaatg 213  Q
    |||||| |||||||||| ||  |||||||||||||| |||||| |||||||| ||||    
T  5419111 ttgggtacttaagtgggccacacatgtacacatcatttattttataaatttttaatg 5419055  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 1765942 - 1765861
Alignment:
Q  153 cattttgggtgcttaagtgggtcatccatgtacacatcatctatttttta---aattttcaatgatattgtttaataagcac 231  Q
    ||||||||||| |||| | | |||  |||||||||||||||||||||||    |||||||||||||||| ||||||||||||    
T  1765942 cattttgggtgtttaaatagatcagacatgtacacatcatctattttttttttaattttcaatgatattatttaataagcac 1765861  T

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