View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16031_low_5 (Length: 315)
Name: NF16031_low_5
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 53 - 299
Target Start/End: Original strand, 49265395 - 49265640
Alignment:
| Q |
53 |
tctagtgtagtagtagagtttattaagtgaggaacttacccattcaacaagactacgctctccttgaggtcgtgtattatcaagagccctacgtcctgaa |
152 |
Q |
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| T |
49265395 |
tctagtgtagtagttta-ttaattaagcgaggaacttacccattcaacaagactacgctctccttgcggtcgtgtattatcaagagccctgcgtcctgaa |
49265493 |
T |
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| Q |
153 |
ataagttcgagcatgaccactccatagctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
252 |
Q |
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| T |
49265494 |
ataagttcgagcatgaccactccatagctatacacatcagatttaatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
49265593 |
T |
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| Q |
253 |
ctacttgtgtggatacatgagtcatatcaccaattggtccaagtttt |
299 |
Q |
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| T |
49265594 |
ctacttgtgtggatacatgagtcatatcaccaattggtccaagtttt |
49265640 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 6603745 - 6603646
Alignment:
| Q |
200 |
agttagttgtccggtcataagatattcaggggcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagtttt |
299 |
Q |
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| T |
6603745 |
agttagttgaccagtcatagcatactccggggcacaatagccatatgttcccattacacgtgtggatacatgagtcttatcaccaactggaccaagtttt |
6603646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 52960224 - 52960296
Alignment:
| Q |
180 |
ctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
252 |
Q |
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||||| ||||| ||||||| |||||||||||| |||||| ||||||||| ||||| |||||||| ||||||| |
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| T |
52960224 |
ctatatacatctgattttacagttagttgtccagtcatagcatattcaggagcacagtaaccataagttccca |
52960296 |
T |
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