View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16031_low_6 (Length: 290)
Name: NF16031_low_6
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 55 - 272
Target Start/End: Complemental strand, 29199369 - 29199153
Alignment:
| Q |
55 |
gtgaacaatttcaatatagataaatcataagagnnnnnnntatgaataagagaacatgaagatccaactcttatagtttcttctatagcaaaatagatga |
154 |
Q |
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| T |
29199369 |
gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga |
29199271 |
T |
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| Q |
155 |
gnnnnnnncaaataaaagtggaagaagaaaatttacccataagaacctttctctgtcagattcaagctcaaacaaaatcagcttctcaaatttctccttc |
254 |
Q |
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| T |
29199270 |
gaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttc |
29199171 |
T |
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| Q |
255 |
tcattttgcacatgattt |
272 |
Q |
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|||||||||||||||||| |
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| T |
29199170 |
tcattttgcacatgattt |
29199153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 19768954 - 19768806
Alignment:
| Q |
125 |
ttatagtttcttctatagcaaaatagatgagnnnnnnncaaataaaagtggaagaagaaaatttacccataagaacctttctctgtcagattcaagct-c |
223 |
Q |
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| T |
19768954 |
ttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagctaa |
19768855 |
T |
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| Q |
224 |
aaacaaaatcagcttctcaaatttctccttctcattttgcacatgattt |
272 |
Q |
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| T |
19768854 |
aaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgattt |
19768806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
| Q |
55 |
gtgaacaatttcaatatagataaatcataagagnnnnnnntatgaataagagaacatgaagatccaactcttatagtttcttctatagcaaaatagatga |
154 |
Q |
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||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| ||| || || ||||||||||||| ||||||||||||| |
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| T |
25901099 |
gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga |
25901197 |
T |
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| Q |
155 |
gnnnnnnncaaataaaagtggaagaaga |
182 |
Q |
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| T |
25901198 |
gaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 5478268 - 5478236
Alignment:
| Q |
240 |
tcaaatttctccttctcattttgcacatgattt |
272 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5478268 |
tcaaatttctccttctcattttgcacatgattt |
5478236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 50227378 - 50227416
Alignment:
| Q |
163 |
caaataaaagtggaagaagaaaatttacccataagaacc |
201 |
Q |
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| T |
50227378 |
caaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 6174364 - 6174412
Alignment:
| Q |
11 |
catcatcaccgaaaaacttttgtctctgttgaaaggcgagaaaagtgaa |
59 |
Q |
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||||||||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
6174364 |
catcatcactggaaaacttttgtctctgttgaaaggtgagaaaagtgaa |
6174412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 2685044 - 2685076
Alignment:
| Q |
240 |
tcaaatttctccttctcattttgcacatgattt |
272 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2685044 |
tcaaatttctccttctcattttgcacatgattt |
2685076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 45008469 - 45008501
Alignment:
| Q |
240 |
tcaaatttctccttctcattttgcacatgattt |
272 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45008469 |
tcaaatttctccttctcattttgcacatgattt |
45008501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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