View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16031_low_8 (Length: 263)
Name: NF16031_low_8
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4997169 - 4996956
Alignment:
| Q |
1 |
aaattggtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4997169 |
aaattcgtagcaagtgaaagattttggagtgttggaatatgacagaaattagatggaaaatcaccataaataccggtttctgtgaggtcgattgatacaa |
4997070 |
T |
|
| Q |
101 |
cggatttattccacgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4997069 |
cggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtgtttggaagccaatcattgagacttttgtttttgtcatcaat |
4996970 |
T |
|
| Q |
201 |
ttgtgtgttcttta |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4996969 |
ttgtgtgttcttta |
4996956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University