View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16031_low_9 (Length: 255)
Name: NF16031_low_9
Description: NF16031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16031_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22902341 - 22902577
Alignment:
| Q |
1 |
cataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaattaatgtaaacattgaaataaagttca |
100 |
Q |
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| T |
22902341 |
cataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaagtaatgtaaacattgaaataaagttca |
22902440 |
T |
|
| Q |
101 |
ttaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgtcacattgaaattactacgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22902441 |
ttaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgttacattgaaattactacgcg |
22902540 |
T |
|
| Q |
201 |
gatcactatccgagttcatctcggttaaagtaccata |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
22902541 |
gatcaccatccgagttcatctcggttaaagtaccata |
22902577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22954009 - 22954245
Alignment:
| Q |
1 |
cataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaattaatgtaaacattgaaataaagttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22954009 |
cataaaatacggagtagccaaagtattatgagtcttttcaccgatatcaagatccttggcagccaacaaggaagtaatgtaaacattgaaataaagttca |
22954108 |
T |
|
| Q |
101 |
ttaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgtcacattgaaattactacgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22954109 |
ttaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatgttacattgaaattactacgcg |
22954208 |
T |
|
| Q |
201 |
gatcactatccgagttcatctcggttaaagtaccata |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
22954209 |
gatcaccatccgagttcatctcggttaaagtaccata |
22954245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 41049640 - 41049753
Alignment:
| Q |
80 |
taaacattgaaataaagttcattaagacctttactgacaatgtcacagaaatgaagtcgaacaaggtattgaaatcctggttcgacatcaaacttccatg |
179 |
Q |
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|||||||||||||||||| ||| |||||||||||||| || ||||| || ||| |||||||||||||||||||||||| || |||||||| ||| | |
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| T |
41049640 |
taaacattgaaataaagtgtattgagacctttactgactatatcacaaaagtgagttcgaacaaggtattgaaatcctggctccgtatcaaactgccacg |
41049739 |
T |
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| Q |
180 |
tcacattgaaatta |
193 |
Q |
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|||||||||||||| |
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| T |
41049740 |
tcacattgaaatta |
41049753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 13974678 - 13974730
Alignment:
| Q |
80 |
taaacattgaaataaagttcattaagacctttactgacaatgtcacagaaatg |
132 |
Q |
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||||||||||| ||||||| |||||| ||||| || ||||||||||| ||||| |
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| T |
13974678 |
taaacattgaagtaaagttgattaagtcctttgctcacaatgtcacaaaaatg |
13974730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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