View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16032_high_1 (Length: 697)

Name: NF16032_high_1
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16032_high_1
NF16032_high_1
[»] chr7 (1 HSPs)
chr7 (1-697)||(7750210-7750906)


Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 7750906 - 7750210
Alignment:
Q  1 ccctcgcgaagttaaccaaccttttgcacctcgacctcagcctaaataacctcacaggcccaattcctagttttcttgccctactcaagggcctaacttt 100  Q
    |||||||||||||| |||||||| | || ||||||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||| |||    
T  7750906 ccctcgcgaagttatccaaccttgtccatctcgacctcagcctaaacaaccttacaggcccaattcctagttttctaaccctactcaagggcgtaaattt 7750807  T
Q  101 cattgacttctcttccaacagcctttccggcccaattccatcatctcttagccaactgacgaacctcattagcattacctttggagcaaacaaactttcc 200  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7750806 tatcgacttctcttccaacagcctttccggcccaattccatcatctcttagccaactgacgaacctcattagcattaactttggagcaaacaaactttcc 7750707  T
Q  201 ggcccaatcccaccctccctgggccggctcaagaggctaacagggctcatgctttacgccaacagattttctggctctataccgtcatctcttggtcaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7750706 ggcccaatcccaccctccctgggccggctcaagaggctaacagggctcatgctttacgccaacagattttctggctctataccatcatctcttggtcaac 7750607  T
Q  301 tgtctagacttaataatctcaatcttcgcgcaaaccatctcaccggtacaataccaaattccttgagcaagctgacaaaccttaacctccttgtgctgga 400  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  7750606 tgtctagacttaataatctcaaccttcgcgcaaaccatctcaccggtacaataccgaattccttgagcaagctgacaaaccttaacctccttgtgctcga 7750507  T
Q  401 cacaaacagacttagtggaccaattccatcgttcttgggccgtttaaaaaacctcaccttaatcgtcctagcaaataaccgtttttctggcccaattcag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  7750506 cacaaacagacttagtggaccaattccatcgttcttgggccgtttaaaaaagctcaccttaatcgtcctagcaaataaccgtttttctggcccaattccg 7750407  T
Q  501 gcctctctcggaaacctgccggctctgtctcttcttgatgtctcccataacaagctcactggttcaatacccaaattccccaagagcctaacaaaccttg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7750406 gcctctctcggaaacctgccggctctgtctcttcttgatgtctcccataacaagctcactggttcaatacccgaattccccaagagcctaacaaaccttg 7750307  T
Q  601 atgttagtttcaataggctttgtggcccaattcccaaaaggtggttcaattttgattcacatgttttttatcataataaatgcctctgtgctgctcc 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  7750306 atgttagtttcaataggctttgtggcccaattcccaaaaggtggttcaattttgattcacatgttttttatcataataaatgcctttgtggtgctcc 7750210  T

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