View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16032_high_8 (Length: 240)

Name: NF16032_high_8
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16032_high_8
NF16032_high_8
[»] chr7 (2 HSPs)
chr7 (1-223)||(10614405-10614627)
chr7 (103-223)||(15092216-15092336)
[»] chr3 (4 HSPs)
chr3 (78-223)||(13470797-13470942)
chr3 (70-223)||(51764505-51764658)
chr3 (105-158)||(51121023-51121076)
chr3 (173-223)||(51113846-51113896)
[»] chr6 (16 HSPs)
chr6 (71-219)||(6415848-6415996)
chr6 (103-223)||(7994247-7994367)
chr6 (119-223)||(6402790-6402894)
chr6 (103-214)||(6394778-6394889)
chr6 (117-223)||(6589388-6589494)
chr6 (106-223)||(7119074-7119191)
chr6 (103-223)||(6423131-6423251)
chr6 (117-223)||(6603267-6603373)
chr6 (104-214)||(6594680-6594790)
chr6 (117-223)||(14818310-14818416)
chr6 (106-223)||(7131552-7131669)
chr6 (117-214)||(19632367-19632464)
chr6 (117-223)||(14820621-14820727)
chr6 (176-216)||(6409993-6410033)
chr6 (123-223)||(6585302-6585402)
chr6 (72-104)||(16566765-16566797)
[»] chr8 (1 HSPs)
chr8 (179-223)||(32151291-32151335)
[»] chr5 (2 HSPs)
chr5 (102-190)||(17205512-17205600)
chr5 (179-223)||(37937877-37937921)
[»] chr2 (2 HSPs)
chr2 (117-223)||(45245150-45245256)
chr2 (179-223)||(1037729-1037773)
[»] chr4 (3 HSPs)
chr4 (182-223)||(566182-566223)
chr4 (117-214)||(53761844-53761940)
chr4 (179-223)||(55908793-55908837)
[»] chr1 (1 HSPs)
chr1 (117-221)||(7554416-7554520)
[»] scaffold0041 (1 HSPs)
scaffold0041 (182-223)||(39177-39218)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10614405 - 10614627
Alignment:
Q  1 aatgcacatttgtaagttgacatctaaaaaagtaatttatgagaaaattatgaaacttacagagttcaaactttcagaatactagtaaagaagataccca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10614405 aatgcacatttgtaagttgacatttaaaaaagtaatttatgagaaaattatgaaacttacagagttcaaactttcagaatactagtaaagaagataccca 10614504  T
Q  101 tgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagt 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10614505 tgctctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagt 10614604  T
Q  201 tctttgagatcacatagagtgtt 223  Q
    |||| ||||||||||||||||||    
T  10614605 tcttcgagatcacatagagtgtt 10614627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 15092336 - 15092216
Alignment:
Q  103 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttc 202  Q
    ||||||||||||  |||||||||||| | |||||||||||||  ||||||||||||||| | ||| |||||||||||||||||||||||||| ||| |||    
T  15092336 ctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattc 15092237  T
Q  203 tttgagatcacatagagtgtt 223  Q
    ||||||||| |||||||||||    
T  15092236 tttgagatcgcatagagtgtt 15092216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 13470942 - 13470797
Alignment:
Q  78 aatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaa 177  Q
    ||||||||||||||||||| ||||||||||| |  ||  ||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  13470942 aatactagtaaagaagatatccatgctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaa 13470843  T
Q  178 tagttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  13470842 tagttgcaaaagcccacaacaattctttgagatcatatagagtgtt 13470797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 51764658 - 51764505
Alignment:
Q  70 actttcagaatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactcc-ttcttctgtgacattatgagaaag 168  Q
    ||||||| ||||||||||||||||     | || |||||||||||  |||||||||| ||| ||||||||||||| |||| || ||||||||| | || |    
T  51764658 actttcaaaatactagtaaagaaggcgatcttgttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctcct-tgacattatcacaatg 51764560  T
Q  169 ttcaagtaatagttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||| |||||||||||||||||||| | ||| |||||||||||| |||||||||||    
T  51764559 ttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgtt 51764505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 51121076 - 51121023
Alignment:
Q  105 ctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacat 158  Q
    ||||||||||  |||||||||||||| ||||||||||||||| || ||||||||    
T  51121076 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 51121023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 51113896 - 51113846
Alignment:
Q  173 agtaatagttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||| |||||||||||||||| |||  |||| ||||||||||||||||||    
T  51113896 agtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtt 51113846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 6415848 - 6415996
Alignment:
Q  71 ctttcagaatactagtaaagaagatacccatgctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagtt 170  Q
    |||| ||||||||||||||||||||| ||||||||||| | |||  ||||||| |||||| |||||||||||||  ||||||||||||||| | ||| ||    
T  6415848 ctttaagaatactagtaaagaagatatccatgctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaatt 6415947  T
Q  171 caagtaatagttgcaaaagcccactacagttctttgagatcacatagag 219  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6415948 caagtaatagttgcaaaagcccgctacaattctttgagatcacatagag 6415996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 7994367 - 7994247
Alignment:
Q  103 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttc 202  Q
    |||| ||| |||| |||||||||||||| ||||||||||||| || || || |||| || | ||||||||||||||||||||||||| |||  ||| |||    
T  7994367 ctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattc 7994268  T
Q  203 tttgagatcacatagagtgtt 223  Q
    |||||||||||||| ||||||    
T  7994267 tttgagatcacatatagtgtt 7994247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 6402790 - 6402894
Alignment:
Q  119 cagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagt-tcaagtaatagttgcaaaagcccactacagttctttgagatcacatag 217  Q
    |||||||||| | |||||||| |||| | |||||||||||||| | ||  | |||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  6402790 cagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaa-taatagtttcaaaagcccactacaattctttgagatcacatag 6402888  T
Q  218 agtgtt 223  Q
    ||||||    
T  6402889 agtgtt 6402894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 6394778 - 6394889
Alignment:
Q  103 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttc 202  Q
    ||||||||||||  |||||||||||||| |||||| ||| || | |||||||||||| | | ||   ||||||  || |||||||||||||| ||| |||    
T  6394778 ctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 6394877  T
Q  203 tttgagatcaca 214  Q
    ||||||||||||    
T  6394878 tttgagatcaca 6394889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 6589494 - 6589388
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    |||||||||||||| ||||||||||||| || || ||||||| || | |||||| |||| ||| ||||| ||||||  |||| || |||||||||| |||    
T  6589494 tgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagata 6589395  T
Q  217 gagtgtt 223  Q
     ||||||    
T  6589394 tagtgtt 6589388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 7119074 - 7119191
Alignment:
Q  106 tctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttt 205  Q
    |||||||||  ||||||||||| || ||||||||||| ||| || |||||||| || | ||  ||  |||||||||| ||||||||| | ||| |||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  206 gagatcacatagagtgtt 223  Q
    |||||||||| |||||||    
T  7119174 gagatcacatggagtgtt 7119191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 6423131 - 6423251
Alignment:
Q  103 ctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttc 202  Q
    ||||||||||||  ||||||||  |||| || |||||| |||||  | ||| |||| || | ||  |||||||||||||||||||| ||||| |||  ||    
T  6423131 ctctctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaactc 6423230  T
Q  203 tttgagatcacatagagtgtt 223  Q
    ||||||||| |||||||||||    
T  6423231 tttgagatcgcatagagtgtt 6423251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 6603373 - 6603267
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaa-agttcaagtaatagttgcaaaagcccactacagttctttgagatcacat 215  Q
    |||||||||||||| |||||||||||||||  |||||||||| || | || | ||||| |||||||| ||||||||||  |||  ||||||||||| |||    
T  6603373 tgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaa-taatagttccaaaagcccaggacaactctttgagatcgcat 6603275  T
Q  216 agagtgtt 223  Q
    ||| ||||    
T  6603274 agactgtt 6603267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 6594790 - 6594680
Alignment:
Q  104 tctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttct 203  Q
    |||||||||||  |||||||||||||| |||||||  |||| || ||||||| || || | ||  ||| |||  |||||| |||||||||| ||| ||||    
T  6594790 tctctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattct 6594691  T
Q  204 ttgagatcaca 214  Q
    |||||||||||    
T  6594690 ttgagatcaca 6594680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 14818310 - 14818416
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    |||||||||||||  |||||||||| || |  ||||||||||||| | ||  ||||||||||| | |||||||||||  ||| ||||| ||||||| |||    
T  14818310 tgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcatata 14818409  T
Q  217 gagtgtt 223  Q
     ||||||    
T  14818410 aagtgtt 14818416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 7131552 - 7131669
Alignment:
Q  106 tctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttt 205  Q
    |||||||||  ||||||||||| || ||||||||||| |||  | |||||||| || | ||  ||  |||||||||| ||||||||| | ||| |||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  206 gagatcacatagagtgtt 223  Q
    |||||||||| |||||||    
T  7131652 gagatcacatggagtgtt 7131669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 19632367 - 19632464
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcaca 214  Q
    |||||||||||||| | ||||||||||| |  ||||||| ||||  | ||  ||  ||||| |||||||||||||||| ||| |||||||||||||||    
T  19632367 tgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcaca 19632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 14820621 - 14820727
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    ||||||||| |||| |||||||||| || |  |||||||||| || | |   ||||||||||| | |||||||||||| ||| ||||| ||||||| |||    
T  14820621 tgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatcatata 14820720  T
Q  217 gagtgtt 223  Q
     ||||||    
T  14820721 aagtgtt 14820727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 6409993 - 6410033
Alignment:
Q  176 aatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    |||||||||||||||| || ||| |||||||||||||||||    
T  6409993 aatagttgcaaaagccgacaacaattctttgagatcacata 6410033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 6585402 - 6585302
Alignment:
Q  123 tttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacatagagtgt 222  Q
    |||||||| ||||||||| ||| |  ||||||||||| | | ||  ||  |||||||||| ||||||| ||  |||  ||||||||||||||||||||||    
T  6585402 tttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 6585303  T
Q  223 t 223  Q
    |    
T  6585302 t 6585302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 16566765 - 16566797
Alignment:
Q  72 tttcagaatactagtaaagaagatacccatgct 104  Q
    ||||||||||||||||||||||||| |||||||    
T  16566765 tttcagaatactagtaaagaagatatccatgct 16566797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 32151291 - 32151335
Alignment:
Q  179 agttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  32151291 agttgcaaaagcccactacaactctttgagatcacatagagtgtt 32151335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 17205512 - 17205600
Alignment:
Q  102 gctctctcaattgcatgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagc 190  Q
    |||||||||| |  ||||||||||||||| ||||||||| ||||| ||||||||||| || | || |||| |||| ||| |||||||||    
T  17205512 gctctctcaaatttatgcagttttctaccacatgtttcaatcctttttctgtgacatcattacaatgttccagtattagatgcaaaagc 17205600  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 37937877 - 37937921
Alignment:
Q  179 agttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    |||||||||||||||| |||  |||||||||| ||||||||||||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgtt 37937921  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 45245256 - 45245150
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    |||| ||||||||| ||||||||||||| |  |||||||||| || | |   ||  | |||||||||||||||||||| |||  |||||||||||||||     
T  45245256 tgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatg 45245157  T
Q  217 gagtgtt 223  Q
    |||||||    
T  45245156 gagtgtt 45245150  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 1037773 - 1037729
Alignment:
Q  179 agttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||| |||||||||| ||| ||||||||||||| ||||||||||    
T  1037773 agttgtaaaagcccacaacaattctttgagatcatatagagtgtt 1037729  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 566182 - 566223
Alignment:
Q  182 tgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtt 566223  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 53761940 - 53761844
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcaca 214  Q
    ||||||||||| || ||||||||||||| |  || |||||||||| | || |||  ||||||| |||||||||||||| ||| ||||| |||||||||    
T  53761940 tgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgagatcaca 53761844  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 55908837 - 55908793
Alignment:
Q  179 agttgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    ||||| |||||||||| ||| ||||||||||||| ||||||||||    
T  55908837 agttgtaaaagcccacaacaattctttgagatcatatagagtgtt 55908793  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 7554416 - 7554520
Alignment:
Q  117 tgcagttttctaccgcatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttctttgagatcacata 216  Q
    |||||||||||||| |||| |||||||| | |||||||||||||| | |   ||  ||||| ||||| ||||| |||| |||  |||||||||||| |||    
T  7554416 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatata 7554515  T
Q  217 gagtg 221  Q
    |||||    
T  7554516 gagtg 7554520  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 39177 - 39218
Alignment:
Q  182 tgcaaaagcccactacagttctttgagatcacatagagtgtt 223  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtt 39218  T

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